<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19475

Description Uncharacterized protein
SequenceMGRENFMDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQEGLSELRKIAVRFEEKIFTAASSQTDYLRRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPPSAMQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQSQPTQLQQQLGLQQQPNQVQQNMQQRLQASGQTSSSLLQSQNLIDQQKQLYQSQRAVPETSSNSPEFSFLLYTNYTIFIVDAFVLHCISTIETSLDSTAQTGHSNGGDWQEEVYQKIKAMKETYFSELNEMHQKISAKLLQHDSFPQQPKSEQLEKLKIFKTMLEHILHFLTVSKANIVPAFKDKLSSYEKQILNFINTNRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGLLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSSMLQYQHMKQQQEQQILQSQKYKQQLQQQRQMQHQIMQQKHQLMQQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKSGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLAIGTPGISASPLLAEFTDGTHANVLTTVSSKSNITEQPLERLMKAVKSMSPTALCASVSDIGSVVSMTDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGMSGTKKMRRHTSAMPLNVVSSVGSINDSFKQLTGSETSDLESTATSTVKKPRIEFSAKYLCQVNHLFTLLAHFTVHNYFEDIMFPETLIELLSCMLVDYYVFHYMANHALLEEIREINQQLIDTVVDISDEDVDPGTVATDAEGGEGTVVKCSFNAVALSSNLKSQYMSAQMSPIQPLRLLVPTNYPNCSPVLLDKFPVEVSKEYEDLSVKAKSKFSILLRTLSQPMSLGEIAGTWDVCARAIISEHAQQSGGGSFSSKYGTWENCSMAA
Length1215
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.04
Grand average of hydropathy-0.617
Instability index68.81
Isoelectric point7.43
Molecular weight133830.00
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19475
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.15|      23|      25|     644|     668|       4
---------------------------------------------------------------------------
  295-  315 (35.30/10.74)	QQLGL..Q..QQPNQV.Q.QNMQQRLQ
  497-  514 (30.32/ 7.88)	QQGQL.......PPPHMHS..MQQPQP
  661-  686 (28.54/12.47)	QQRQMqhQimQQKHQLMQQQQ.QQQAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     212.20|      37|      37|     196|     232|       5
---------------------------------------------------------------------------
  111-  150 (47.50/13.28)	KPPDPGSQGMQ.....NQvhsQ.GQSVPIP................................lqcnQS..QAHQQ.LL.PQS
  151-  211 (36.82/ 8.49)	VPNNMASAGV.............QSSAGLQ........sgmpppsamqstlpglqqnqqsslqqstQSMLQQHQQSVLRQQQ
  212-  249 (59.38/18.61)	QPQQTTSAGLQ.....QQ...Q.QQLVGTQ..................................sgNSSMQTNQQS.LHMLS
  627-  705 (33.31/ 6.92)	NPLQSNSSMLQyqhmkQQ...QeQQILQSQkykqqlqqqrqmqhqimqqkhqlmqqqqqqqakqqlPTQLQAHQMPQLHQMN
  756-  777 (35.19/ 7.76)	SPQ......M.................P.Q....................................HSSPQIDQQSLLPSIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.43|      29|      44|     516|     553|       6
---------------------------------------------------------------------------
  515-  551 (35.53/24.76)	QSNQTQSHdnqMNPQlQSiNLQGSMPTMQPnnmTSLQ
  570-  598 (51.90/16.94)	NSLQPGSN...LDPG.QG.NALGSMQQVAP...GLLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.12|      21|      66|     319|     347|       7
---------------------------------------------------------------------------
  319-  344 (29.85/17.23)	QTSSSllqsqNLIDQQKQLYQSQRAV
  387-  407 (38.26/ 7.79)	QTGHS.....NGGDWQEEVYQKIKAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.93|      36|      66|     873|     913|       8
---------------------------------------------------------------------------
  873-  913 (50.94/50.14)	ITEQPlerlMKAVKSM....SPTALcASVSDIGSVVSMTDRIAGS
  941-  980 (56.99/38.81)	ITQDG....MSGTKKMrrhtSAMPL.NVVSSVGSINDSFKQLTGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.86|      15|      16|       4|      18|      10
---------------------------------------------------------------------------
    4-   18 (33.05/22.18)	ENFMDTNNWRPT..PPS
   20-   36 (26.81/16.44)	EPSMDSGDWRTTlqPDS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19475 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGRENFMDTNNWRPTPPSGEPSMDSGDWRTTLQPDSRQRIVNKIMDTLKRHLPFSGQEGLSEL
2) NRPRKPVSALQQGQLPPPHMHSMQQPQPQSNQTQSHDNQMNPQLQSINLQGSMPTMQPNNMTSLQHNTLSSLPGVSTAQQTMLNSLQPGSNLDPGQGNALGSMQQVAPGLLQQNPASTSQQANLNSLSSQSGLSVLQQNMNPLQSNSSMLQYQHMKQQQEQQILQSQKYKQQLQQQRQMQHQIMQQKHQLMQQQQQQQAKQQLPTQLQAHQMPQLHQMNDVNDMKQGISVKPGVFQQHLPAGQRQTYTHQQLKSGAQFPISSPQLHPAASPQMPQHSSPQIDQQSLLPSISKTGTPLQSANSPFVVPSPSTPLAPSPMPGESEKPAPGTSSLSNAANIGHQQGTGVQAGSQSLA
3) QPTQLQQQLGLQQQPNQVQQNMQQRLQASGQ
4) RRISLKMLTMETKSQNTMPNTGNNSKPPDPGSQGMQNQVHSQGQSVPIPLQCNQSQAHQQLLPQSVPNNMASAGVQSSAGLQSGMPPPSAMQSTLPGLQQNQQSSLQQSTQSMLQQHQQSVLRQQQQPQQTTSAGLQQQQQQLVGTQSGNSSMQTNQQSLHMLSQPKVALQQTQQTAPNLLPTQGQTSQQPQQQQQLMSQMQ
1
487
289
86
63
840
319
287










Molecular Recognition Features






MoRF SequenceStartStop




NANANA