<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19473

Description Uncharacterized protein
SequenceMEMSVGSANTGGSPTKLTTVAIAVKSGSGSRRAVRWVVENLKADRFVLVHVMPAVTSIPTPSGDQIPITEMDENVVAMYVQEVKLKFEQVFIPFLNLFKTSKVETVVLEDDYPAIGLLRYISEFGIQTLVLGSYSSNYITRYAYAAVCLLLFHGYGVIFSNVNYRKLKGPGVPNSVLKCAPDTCDIRVVYRQRIITKQANPLWTSGKKYLCLRCSFLSQFTDSLVSVFRNLTGTSSSGFKKHIYGPINASAESTAQNSFGTASSFELNYPYLHAFSSRGSLTNASSISHCHSLGSTQSEKAEVEQLRLELQNTVAMYKEAREELVDTQNKVRLLSSECLEEASRVNAAQEREEAFRKIAAEEKVKLLQAMKDVEEAKHLLSREANRRQMAELNAHKESLEKQKFVDALFCCDRRYRKYTRDEIEVATDFFSVSNVIGQGGYGKVYKCSLHRTPVAVKVLQSDALDRKEEFLREIEVLSQLHHPHIVLLLGACPENGCLVYEYLENGSLEEHILQKSGKPPLPWFIRFRIVFEVASGLAFLHNSKPDPIVHRDLKPGNILLDRNYVSKIGDVGLAKLISDVVPDNITMYKDSILAGTLFYMDPEYQRTGTVRPKSDLYALGLITLQLLTARHPNGLLLAVENAIKNCCLADILDKSITDWPLAEIEELARIALKCSKLRCRDRPDLDTEVLPILKRLVGVADASLKLGKSNVYAPSYYFCPILQEVMDDPHIAADGFTYEHRAIKAWLGKHNVSPVTKRQLQHSVLTPNHTLRSAIHDWKSRVTLSTT
Length787
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.164
Instability index42.17
Isoelectric point8.46
Molecular weight88193.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19473
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.51|      27|      30|     308|     337|       1
---------------------------------------------------------------------------
  308-  334 (43.17/38.35)	LELQNTVAMYKEAREEL..VDTQNKVRLL
  339-  367 (36.34/22.15)	LEEASRVNAAQEREEAFrkIAAEEKVKLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.50|      14|      29|     112|     126|       2
---------------------------------------------------------------------------
  112-  126 (21.75/16.65)	YPAIGLLRYiSEFGI
  144-  157 (26.75/15.79)	YAAVCLLLF.HGYGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.40|      20|     148|     479|     498|       3
---------------------------------------------------------------------------
  479-  498 (40.06/22.67)	QL...HHPHIVLL.LGACPENGCL
  625-  648 (28.33/14.24)	QLltaRHPNGLLLaVENAIKNCCL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19473 with Med32 domain of Kingdom Viridiplantae
Unable to open file!