<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19472

Description Uncharacterized protein
SequenceMKLSSSNNGIYIVSKRGHYLSLLITYQKSTKSAAINGNRESKYVVKWALEKFVPEGNVMFKLLHVRAKIKLIPTPMGNLLPISQVREDVAAAYKKELESQANEMLLPYKKMCAQRKVEADIIIIESDQVANAIAEEVSKNTITRLVIGASSRGMFTRKLKKNNLSSRISACAPSFCTVYAVSKGKLTSIRPSDSEMNGSTKDDSSETSFSSKNSSDYSFSSQTELGSVATYATFRSPSLPMQRSQALSTINQTHLHSRTSSLSRSTESTQFKSPDNNHSRCQSLDNAAGNDDMSSCPNSSESREAVSQNSSHRSLQTDQQSWLPDQISTLDAQADNNPSECEVNINFELEKLRTELRHIREMHAAAQSETIDASQKLNTLSKRRLEEAMKLKEVCLKEEEAKELARQEKAKGRADREASLRQEAEMKASHEAKEKEKLQNYLTGPLQQYQKFTWDEIVSATSSFSEDLRIGMGAYGTVYKCIYHHTAAAVKVLHSKENGRTKQFQQELEILSKIRHPHLLLLLGACPEHGCLVYEYMENGSLEDRLLRKNNTPPIPWFERYRIAWEVGSALVFLHNSKPEPIIHRDLKPANILLDHNFMSKIGDVGLSMMITTDSSSTSTVYKDTGPVGTLCYIDPEYQRTGLISPKSDIYAFGMIILQLLTAKPAIALTHVVETAIDDDNLTRILDSEAGNWPVEETKELAILGLSCAELRRKDRPGLKDRVLPILEKMKEVANKARNSISNIQSAHPNHFICPISKDVMDEPCVAADGYTYERKAIEKWIETNDISPMTNLALPNKNLLPNYSLLSAILEWKSRKQ
Length818
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.509
Instability index48.30
Isoelectric point8.19
Molecular weight91722.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19472
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.16|      15|      18|      51|      66|       1
---------------------------------------------------------------------------
   51-   66 (23.55/21.52)	KFVPE..GNvMFKLLHVR
   70-   86 (21.61/13.84)	KLIPTpmGN.LLPISQVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.41|      46|     298|     165|     212|       2
---------------------------------------------------------------------------
  165-  212 (74.47/49.37)	SS.....RISACApsFCTVY.AVSKGKLTSIRPSDSEMNGSTKDDSSETSFSSK
  462-  513 (67.94/39.30)	SSfsedlRIGMGA..YGTVYkCIYHHTAAAVKVLHSKENGRTKQFQQELEILSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.74|      20|      21|     256|     275|       3
---------------------------------------------------------------------------
  256-  275 (34.73/26.03)	HSRTSSLSRSTESTQFKS.PD
  278-  298 (33.01/24.31)	HSRCQSLDNAAGNDDMSScPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.34|      20|      21|     392|     411|       6
---------------------------------------------------------------------------
  392-  411 (30.49/20.36)	KEVCLKEEEAKELARQEKAK
  416-  435 (30.86/20.70)	REASLRQEAEMKASHEAKEK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19472 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KELARQEKAKGRADREASLRQEAEMKASHEAKEKEK
2) TYATFRSPSLPMQRSQALSTINQTHLHSRTSSLSRSTESTQFKSPDNNHSRCQSLDNAAGNDDMSSCPNSSESREAVSQNSSHRSLQTDQQSWLPDQISTLDAQADNNPSECEVNINF
402
230
437
347










Molecular Recognition Features






MoRF SequenceStartStop




NANANA