<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19471

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMVENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLSDLAVSAATKLQCYRQLGKYFKQSAKALEEQIAREARFYGALISLVLLRTPFLLFPNKLIDCSKIGRLNDNGWLAAASSSEGFIIDLFDNSLYDSAAMCRPSSLSTIRVDHDSAGMLAINLPPNSCRSLHFGFLGVHSADIPKELGKIRTRGSVEQCTREREKESVSDDEYIKETHTLLREVHQSIFDDQVFEMLNREAFNQSIGVNVTGIRENYLQLSIGQGNTLFISLVPSSKGDDQDAANTQDSESAIVPLDSFDNVKLEEGKHGTSKRKWGFPNRTSCEIYLQQIVHEHAFVKAKDKPNLSGTRVSGQSGKDGPGLLGHFCLSLAHRIFSNRVLVELENVVCRVPYLHLMTHPTWHSQTSSWTIFLKVPQSILHAESQSLKSDFQNMKDAVKSQFRTKVVVNDDRINVEGDGAPKVVSLFKRSSENISSVNKYECDLADLPVIILLQAASQVICWLHEEALMVGIKTNRDFLCLTFELEQGDTVSLVAHVNPEDIKGGITWWLVMEDGSTDDWKLQMDMYDGASEYRKFLGHLTLDVLYSTLMDLKTSTLSFLPSLAIYTMFDLFSPATGMDSFSLLISQVPSLRLTVDSRFISSLQMKPNFQELNTSHGYWLHVICFTIKENDEHLNQ
Length677
PositionHead
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.172
Instability index36.96
Isoelectric point5.53
Molecular weight75835.42
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19471
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.45|      16|     156|     503|     520|       1
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  503-  520 (25.65/23.01)	WLHeeALMVGIKTNRDFL
  660-  675 (31.81/21.35)	WLH..VICFTIKENDEHL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.20|      23|      25|     582|     604|       2
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  582-  604 (37.58/24.57)	TLDVLYS..TLMDLKTSTLSFLPSL
  608-  632 (34.61/22.05)	TMFDLFSpaTGMDSFSLLISQVPSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19471 with Med17 domain of Kingdom Viridiplantae
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