<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19470

Description Uncharacterized protein
SequenceMRPPRVWLCAGRGGGGGFRGRGDGGRGRGGGGRGGDRRGSATKSRGGGRGGRGGGRGGGGRGGMKGGSKVIVEPHRHEGVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDVVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAAA
Length297
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.399
Instability index35.50
Isoelectric point10.26
Molecular weight31575.81
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19470
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.32|      14|      16|      26|      39|       2
---------------------------------------------------------------------------
   26-   39 (31.15/ 8.87)	RGRGGGGRGGDRRG
   45-   58 (30.17/ 8.40)	RGGGRGGRGGGRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     205.89|      57|     148|      79|     136|       3
---------------------------------------------------------------------------
   79-  136 (92.35/65.98)	GVFVAKGKEDALVTKNMVPGEAVYNEKRIAVQNEDGTKVEYRVWNPFRSKlAAAVLGG
  152-  173 (18.43/ 6.45)	G..AASGTTVSHVSDVVGPNGVVY..................................
  232-  286 (95.11/63.63)	GHFVISIKANCI..DSTVPAEAVFQSEVKKLQQEQFKPFEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.73|      10|      23|     183|     192|       4
---------------------------------------------------------------------------
  183-  192 (17.60/11.52)	RDLVNMAKKR
  209-  218 (18.13/12.05)	RMLVGMVDAR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19470 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRVWLCAGRGGGGGFRGRGDGGRGRGGGGRGGDRRGSATKSRGGGRGGRGGGRGGGGRGGMKGGSKVI
1
71










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRVWLCAGRGGGGGFRGRGDGGRGRGGGGRGGDRRGSATKSRGGGRGGRGG
1
54