<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19469

Description Uncharacterized protein
SequenceMAGSFRARGSLVVLAIVLSGCLFALSIAKEEAAKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNAERTIFDVKRLIGRKFQDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILGKMKDTAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFEGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKRQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGNFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTHKTEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNSIETYVYNLKSQISDKDKLADKLESDEKEKIEAAVKEALEWLDDNQNAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGGSTEEEDSHDEL
Length666
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.427
Instability index28.92
Isoelectric point5.20
Molecular weight73251.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19469
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.55|      16|      16|     186|     201|       2
---------------------------------------------------------------------------
  186-  201 (26.64/16.14)	AQRQATKDAGVIA.GLN
  203-  219 (20.92/11.21)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.70|      14|      27|     592|     605|       4
---------------------------------------------------------------------------
  592-  605 (22.85/13.67)	ADKLESDEKEK.IEA
  620-  634 (18.85/10.02)	AEKEDYEEKLKeVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.45|      17|      22|     501|     521|       7
---------------------------------------------------------------------------
  501-  518 (25.93/26.09)	RGTPQIE.VTFEVDaNGIL
  525-  542 (25.53/11.05)	KGTHKTEkITITND.KGRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.67|      14|      27|     101|     114|       8
---------------------------------------------------------------------------
  101-  114 (24.26/16.39)	DVKRLIGRKFQDKE
  130-  143 (25.41/17.54)	DGKPYIQVKIKDGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19469 with Med37 domain of Kingdom Viridiplantae
Unable to open file!