<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19468

Description Uncharacterized protein
SequenceMGSEDTIYVAVGGVEESELTLLWVLHNLKPRKVCILHVHQPSKMISSMYGVDGNLAEIIFDQQQIRGLEEVGKEMMNRILDEYLLFCSQAGVSAIRLHIQMDDVAKGIVELIRRHNIKKLVMGAAADEHFSEGMWLMSEKAQYVNENAPFSCQIWFICREHLVHTRFETGQSSNAPSPSGSSYLTSSTEAAGIFGSTVSEEREESECEIELYDVLHSGEEGSSNDQLFDRLEQALKEAESSNQKAFEESDRRVKAEMNATRAMRQAKMLERLYNECKRENETALAKQNESLENIKRLREELSVSREQNSILESQVANSERRMKQLEDELSSALEQLQVSLKERDELQIELENSHKVIEELLRKQAEETSSTHMDQFNLDQLSVSEIHDATLDQLEICQKEKDELQVELENTRRINKELLRKQSEDTSNSHLQQPFIEFSLSEIEEATEDFDQLYKIAEGAQGSVYYKCVLRHTEVIIKVLGRNSFQDSNEFLREVDDLIKLRHPNLVNLIGACPEKTALVYEYVPNGSLEDHLNSRNDMPPLSWQSRMHIATQLCSTLMFLHAGKLVHGNLKPGNILLDDNFGCKLSDFGSCRAFSLIENSSNMTESSNPNPYLDPDFRNSRRVSHSLDLYPFGIIVLQLLSGRSTQGIAESAQSELLNGGNLSSFLDSSAGNWPHQVAQLTHLAIRCCDINRSRRPDLASDVLKVLETMKPSVASIAYAPESNEDGEPPSYFLCPILQAVMSDPHVAADGYTYEATALQDWLADHDTSPMTNLRLPNLNLIPNFPLRSAIQQWQENR
Length798
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.485
Instability index59.44
Isoelectric point4.91
Molecular weight90346.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19468
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     279.25|      54|      56|     341|     394|       1
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  202-  272 (62.14/30.35)	REESEC....EIE.LYDvlhsgeegsSNDQLFDR.........LEQALKEAESSNQKA....FEESDRRVKAEMNATramrqakmLERL
  277-  336 (53.22/25.05)	KRENETalakQNEsLEN.........IKRLREELsvsreqnsiLESQV.ANSERRMKQ....LE.DELS......SA........LEQL
  341-  394 (93.13/48.77)	KERDEL....QIE.LEN.........SHKVIEEL.........LRKQAEETSSTHMDQ....FNLDQLSVSEIHDAT........LDQL
  399-  453 (70.76/35.47)	KEKDEL....QVE.LEN.........TRRINKEL.........LRKQSEDTSNSHLQQpfieF.....SLSEIEEAT......edFDQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.70|      18|     270|     501|     519|       5
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  501-  519 (30.58/20.34)	LRHPNLvNLIGACPEKTAL
  774-  791 (34.12/18.62)	LRLPNL.NLIPNFPLRSAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19468 with Med32 domain of Kingdom Viridiplantae
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