<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19467

Description Uncharacterized protein
SequenceMALVSVVPAITEGMNSMRFCDVRAPGILSSGREIVEETVARIIEEKIYVAVGKNVDKYKSVLFWALQHSGGKKICIIHVHQPAKMIPVSEMGTKFPASKLEEQEVKAYWEIERKNMEKMLNDYLLLCLQRGVQAEKLYIERDSIEQGILEMISENRIRMLVMGGAADKHYSKKVVDLKSKKAIFVRENAPNTCHTIWFLCKGLLIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSQSVILRQTSRVKPSTSAPDSLRRVRSENVYGHVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGTEVNGNGLQSSLIPHAEGNFNLSSLPNIQDVTTDNTLYDQLQKVMAEATNSRREAFEEAMKRSEAEKDALVSIRRVKASEILYAQELKQRKEIEEALAKEKDELGKMKNQRDEVRIELQAALGQKSSLENQIAESEKEVKELQEKIFSAVELLQNYKKERDELQMERDNALKEAEELRKSRAEPSGAHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGSIYKGNLRHTTVAIKRLHSNSLQGPSEFQQEVDVLSKMRHPNLVTLIGACPDAWTLIYEYLPNGSLEDRLSCRGNSPPLSWQTRIRLATELCSVLIFLHSSKPHGIVHGDLKPANILLDANFVTKLSDFGICRLLSDNTTICCRTDPKGTFAYMDPEFLSTGELTQKADVYSFGVILLRLLTGRQALGIRKEVQYALDNGSLKNLLDPLAGDWPFVQAEQLANLALRCCEMNRRCRPDLSTDVWRVLEPMRASCGGSSSFQLGSEEQCHPPSYFICPIFQEVMQDPHVAADGFTYEAEALRGWLDSGHDTSPMTNIKLAHSNLVPNLALRSAIQEWLQQH
Length893
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.402
Instability index51.18
Isoelectric point5.88
Molecular weight99969.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19467
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.76|      17|      17|     285|     301|       1
---------------------------------------------------------------------------
  285-  301 (32.44/18.49)	EGLS.TPWNRSDVEGSSN
  304-  321 (25.32/12.91)	DGLSrSPQNSVLSSSSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     725.76|     247|     313|       1|     282|       2
---------------------------------------------------------------------------
    1-  282 (374.74/340.70)	MALVSVVPAI.TE....GMNSMRFCDVRAPGILSSGREIVEETVARIIEEKIYVAVGKNVDKYKSVLFWALQHSGGKKICIIHVHQpakmIPVSEMgtkfpaskLEEQEVKAYWEI......ERKNMEKMLN..DYLLLCLQRGVQaeklyiERDSIEQGILEmiSENRIRML..VMGGAAD..KHYSKKVVDLKSKkaifvRENAPNTCHTI...WFLCKGllIYTRKLSSDVTDTKVASSSLPASPNLESSENHFRSqsvI....LRQTS....RVKP.STSAP.......DSLRRVRSENVYGHVGStlgfpSPD
  323-  605 (351.02/244.06)	MADAALVPYMgTEvngnGLQSSLIPHAEGNFNLSSLPNIQDVTTDNTLYDQLQKVMAEATNSRREAFEEAMKRSEAEKDALVSIRR....VKASEI........LYAQELKQRKEIeealakEKDELGKMKNqrDEVRIELQAALG......QKSSLENQIAE..SEKEVKELqeKIFSAVEllQNYKKERDELQME.....RDNALKEAEELrksRAEPSG..AHMHQFFTEFSFTEIEEATLNFDPSLKIGEGGYGS...IykgnLRHTTvaikRLHSnSLQGPsefqqevDVLSKMRHPNLVTLIGA.....CPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19467 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HVGSTLGFPSPDGNEGLSTPWNRSDVEGSSNEWDGLSRSPQNSVLSSSSSNGMADAALVPYMGT
271
334










Molecular Recognition Features






MoRF SequenceStartStop




NANANA