<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19464

Description Uncharacterized protein
SequenceMDQTQRSVAAAANSRTYQFHPARAAITDLFNLYLGVRNSRQKADDSVREPPNKTQKRVLALNRELPPRNEQFLLDFEQLQTQFGDQDQLQSVTESVLISLVIQCCSHAPRAEFLLFALRSLCSIGYVNWDTFLPSLLSSVASAEGPVSQGSQGVPSVSSSVSQSGMMPSTSVIANASNFQSANAASTLTSVHVIGSPAQSTIEPSSGATLSPVKLSNIACSGQPSTTRMDSSIRDNAISNLRQLCCKIILTGLECNLKPVTQAEIFHHMLNWLVNWDQRQHGNEECDGKSWRLEKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPSFGTHRILSQTTPNVSVEGVANLRYSPITYPSVLGEPLHGEDLAASIQRGSLDWERALRCIRHAIRSTPSPDWWKRVLVVAPFYRGSVPTPEINCWQEWLVFSDIFFFLMKSGCIDFVDFIDKLGSRLSASDHHILNTNHVTWLLAQIIRVEHVMTALNTDSRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTRDYLNNEQLQKGKQIDEWWRQVSKGERMMDYMSMDDKSIGMFWVVSYTMAQPACETVMNWLSSGGVTELLPGANVQPNERFMVMREVSPLPISLLSGFSMNLYLKLVFQMEESLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPAVTLLVLEIVNYRLLPLYRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHRWSEKTLCYFPSILRDLLMTRTDKRGLAIQEWQQQLMVEHVLTFLQSETTVINQCTQLLSSSTEPNYVMTYLNRSFPQHRQYLCAGAWILMQGHPENINSGNLARVLREFSPEEVTSNIYTMVDVLLHHIHIELQHGHSLQISLLDRQELQQRVKLYCMNRGPPEHWLYTGIFKRSDLQNALGNHLSWKERYPTFFDDIVARLLPVIPLVVYRLIENDAIESADRMLGMYSLFLAYHPLRFTFVRDILAYFYGHLPGKLTVRILNVLDLSKIPFSESFPQHISSSNPAICPPPEYFATLLLALVNNVIPPLNSNSRTGSMGDASNNSVRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLVQIVVNIQPTLIQSSNGLHGASSGAVQGSVLPTSPSGGSTDSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYMEASRIIKESWWLTDGKRSLSELDSAVSYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIQQLRPVTSVAMLRIAFRIMGPLLPRLVTAHNLFNKNVKGEYWRKKHMQIRVHEKHKVLEELEMSKRLGIDLKEILSLLLNTLVDVFGKNTQPPVPVEASEITDLIDYLHHIIHYEGQAGPVQANSKPRPEVLSICGRAAESLRPDVQHLLSHLKPDVNSSIYAATHPKIAQNPS
Length1555
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.110
Instability index52.01
Isoelectric point6.53
Molecular weight174924.53
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19464
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.12|      18|      18|     123|     140|       1
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  123-  140 (33.79/17.32)	SI.GYVNWDT.FLPSLLSSV
  142-  161 (21.33/ 8.43)	SAeGPVSQGSqGVPSVSSSV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     300.43|     105|     119|    1289|    1407|       2
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 1291- 1405 (152.23/127.03)	QACGLLLAQLPPEF....HLQLYM.EASRIIkESwwLTDGKR...SLSELDSAVSYALLDP.TWASQDNTSTAIGNIVALLHsFFSNLPQewLEGTHVIIQ...QLRPvtsvAMLRIAFRIMGPLLP
 1409- 1525 (148.20/82.50)	TAHNLFNKNVKGEYwrkkHMQIRVhEKHKVL.EE..LEMSKRlgiDLKEILSLLLNTLVDVfGKNTQPPVPVEASEITDLID.YLHHIIH..YEGQAGPVQansKPRP....EVLSICGRAAESLRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.92|      17|      17|     422|     438|       3
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  422-  438 (32.23/21.70)	DWERALRCIRHAIR.STP
  441-  458 (28.69/18.44)	DWWKRVLVVAPFYRgSVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.84|      14|      17|     915|     928|       4
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  915-  928 (27.34/15.43)	AWILMQGHPENINS
  932-  945 (23.50/12.28)	ARVLREFSPEEVTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.94|      14|      17|    1061|    1076|       6
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 1061- 1076 (17.97/17.98)	FLAYHPLRFTfVRdIL
 1079- 1092 (26.97/14.66)	FYGHLPGKLT.VR.IL
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.66|      17|      17|    1104|    1120|       7
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 1104- 1120 (32.46/17.46)	ESFPQHISSSNPAICPP
 1122- 1138 (28.21/14.26)	EYFATLLLALVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.43|      12|      17|    1233|    1248|       8
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 1233- 1248 (12.02/19.36)	GlhGASSGAvqGSVLP
 1253- 1264 (22.41/13.16)	G..GSTDSA..GRSTP
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.74|      12|      18|    1145|    1158|       9
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 1145- 1158 (17.21/15.89)	TGSMGDAsnNSVRG
 1166- 1177 (22.53/13.06)	TPQSGPA..NASEG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.45|      16|      23|     678|     693|      11
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  678-  693 (28.31/19.41)	M.NLYLKLVFQMEESLF
  703-  719 (24.14/15.37)	MvETYTRLLLIAPHSLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.65|      16|      18|    1187|    1202|      14
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 1187- 1202 (26.77/19.77)	PGTYTQLV..LETAVIEI
 1206- 1223 (20.87/13.58)	PISASQIVssLVQIVVNI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.23|      14|      23|     812|     825|      15
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  812-  825 (23.14/12.42)	LLYLQTMLEQILAT
  835-  848 (26.09/14.91)	LCYFPSILRDLLMT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19464 with Med23 domain of Kingdom Viridiplantae
Unable to open file!