<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19461

Description Uncharacterized protein
SequenceMATPPVAAGGNFEASPPPPMQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGMEYMLSEVMEPHLFVIRKQKRDSAEKVTPMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKACTTAASKLEKIGYVDTENESETVEPKGGKEAINIKEVKRVDHILASLQRKLPPAPLPPPFPDGFVPPSTAEAEKDPENQQTAEPQPSAVDPIIDQGPAKRMKF
Length252
PositionHead
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.09
Grand average of hydropathy-0.415
Instability index58.68
Isoelectric point5.35
Molecular weight28148.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19461
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.10|      11|     187|      16|      26|       1
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   16-   26 (26.57/10.69)	PPPPMQPPGTD
  201-  211 (25.53/10.02)	PPAPLPPPFPD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.28|      22|      24|     109|     131|       2
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  109-  131 (35.24/29.49)	AEKVTPMLaYYILDGSIYQAPQL
  136-  157 (37.04/25.91)	AARVGRAL.YYISKACTTAASKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19461 with Med6 domain of Kingdom Viridiplantae
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