<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19458

Description Uncharacterized protein
SequenceMARRNGERKEHSAMVAVGIDKDKGSQYALKWTVDHLLSKGQSINLVHVKTKPSSIPTPSGLLTNISKVNDDVAKAYMQQVDNQAKEVFLPFRCFCSRKDKTNKPTKLPSSLAMVCRGGLWNMYDIRVRKARITSNEIILEDTDIAKALIDYVSSSSIEILVLGAPTKGGFIRRFRSTELTTTVSKGAPNYCTVYVIGKGKISSVRSASALPPARHHPPAPQPQQPPPSIIPEITESPSAQALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPRTQRLSISSEYDSISLGSSYSGNRSIDFSSQYESSSTSHESGRTSWSSQNMMPQDDVEAEMRRLKQELKQTMEMYSAACKEALSAKQRAKELQSWKLQEEQKIEEARLAEEAALSLAEKEKAKCQVAIEAAQAAQLIAELEAQKRKIVEKNANKEADDRKLAINNFGHDLRYRKYTIQEIETATDLFSPSRKIGEGGYGPVYHCNLDHTPVAIKVLRPDAAQGQLQFQQEVEVLCCIRHPNMVLLLGACPEYCCLVYEYMANGSLEDRLFRRNNSPVLPWQVRFRIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKPPMGLTHHVENAIENGNFAGILDPAVHDWPREETLIFAKLALKCSELRRKDRPDLGRVVLPELDKLRTLADEKMPFIKIGGSAGTSPNNSHVSTSSIQDGHDNSRSY
Length788
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.482
Instability index52.48
Isoelectric point8.86
Molecular weight87979.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19458
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.54|      25|      29|     219|     247|       1
---------------------------------------------------------------------------
  219-  246 (45.17/31.34)	APQPQQPPPSIIPEITESPSAqalF..PR..Y
  249-  277 (40.37/17.14)	APSRSQHPPRNMYEDLEMKSP...FtrPRnkY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.36|      18|      18|     302|     319|       2
---------------------------------------------------------------------------
  283-  296 (18.75/ 8.70)	..ESD.ISFVSS.GRPRT
  302-  319 (33.48/21.42)	SSEYDSISLGSSYSGNRS
  323-  339 (29.13/17.67)	SSQYESSST.SHESGRTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.80|      25|      29|     354|     382|       3
---------------------------------------------------------------------------
  354-  378 (42.08/34.73)	EMRRLKQELKQTMEMYSAACKEALS
  385-  409 (39.72/22.05)	ELQSWKLQEEQKIEEARLAEEAALS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.64|      29|      29|     433|     461|       4
---------------------------------------------------------------------------
  433-  461 (45.92/31.23)	ELEAQKRKI..VEKNANKEADDRKLAINNFG
  463-  493 (44.72/30.23)	DLRYRKYTIqeIETATDLFSPSRKIGEGGYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.10|      16|      76|      36|      67|       7
---------------------------------------------------------------------------
   38-   55 (24.10/44.36)	SKGQSINLVHVKTkpSSI
  763-  778 (30.00/ 6.30)	SAGTSPNNSHVST..SSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.61|      13|     416|     200|     212|       9
---------------------------------------------------------------------------
  200-  212 (23.01/13.31)	KISSVRSASALPP
  618-  630 (23.60/13.82)	KISDVGLARLVPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19458 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QALFPRYRGAPSRSQHPPRNMYEDLEMKSPFTRPRNKYEPSVPESDISFVSSGRPRTQRLSISSEYDSI
2) SASALPPARHHPPAPQPQQPPPSIIPEITES
3) SIDFSSQYESSSTSHESGRTSWSSQNMMPQDDVEAEMRRLKQE
240
206
319
308
236
361










Molecular Recognition Features






MoRF SequenceStartStop




NANANA