<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19456

Description Uncharacterized protein
SequenceMGDGNNTSGRGIAANNTPSSNSEKPEWLQQYNLLGKIGEGTYGLVFLARIKSPTNRGKCIAIKKFKQSKDGDGVSPTAIREIMLLREISNENVVKLVNVHINHADMSLYLAFDYAEYDLYEIIKHHRDKVNHAMNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTPNPFQLDQLDKIFKILGHPTLEKWPTLASLPHWQSDVQHIQSHKYENAGLHSVVHLSPKSPAFDLLSRMLEYDPRKRITAAQALEHEYFRIEPLPGRNALVPSQPGEKIVNYPTRPVDQNTDFEGTTSIQQPSQPVSSGNVAGGMGAHVGRNGSVNRPMPPPPMQRMPQGIMAYNFPSQAGVGGGINPGGMPMQRNLAAQAHQQQQLRRKDPGMGMTGYPPQQKSRRM
Length480
PositionKinase
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.453
Instability index40.31
Isoelectric point9.25
Molecular weight53410.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19456
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.56|      26|      28|     391|     418|       1
---------------------------------------------------------------------------
  391-  418 (43.52/34.32)	GNVAGGMGAHVGRNGSVNrPmPPPPMQR
  422-  447 (52.03/31.00)	GIMAYNFPSQAGVGGGIN.P.GGMPMQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.88|      14|      42|     169|     198|       6
---------------------------------------------------------------------------
  158-  180 (17.57/13.72)	IIHRDLKPSnilvmgegeEQGVV
  190-  204 (22.31/22.41)	IYQAPLKPL........sENGVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19456 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALVPSQPGEKIVNYPTRPVDQNTDFEGTTSIQQPSQPVSSGNVAGGMGAHVGRNGSVNRPMPPPPMQRMPQGIMAYNFPSQAGVGGGINPGGMPMQRNLAAQAHQQQQLRRKDPGMGMTGYPPQQKSRRM
351
480










Molecular Recognition Features






MoRF SequenceStartStop




1) IAIKKF
2) QQLRRKD
3) TGYPPQQKSR
60
457
469
65
463
478