<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19455

Description Uncharacterized protein
SequenceMWTPRSSYGERREIRTNVGLVAVAIDKDKNSHNALKWAIDHLLQKGQTLILIHVKVKPFSPYTTPLPTSRLNQFSEMNGDLPLVYKDPDPQTRELFLPFRCFCTRKDIPCKDVVLEETDVAKALIEYVSQAGIEVLVVGASTRTGFLSKFKATDISAMVSKNAPDFCSVYVISKSKISSMRSASRPAPAISPLRNHLLNQPGLMSTPPESHILPDNSSRVEKPRLEPQRKSTDSMDSIRSPFNRGGQNVKPYLALPMPDTDISFVSSGRQSIDRMFPEFYDYQEASRTATTPRLSNVSDYESNFSFESMQFGRNSVDLSSPHNFSYVSQDSDNFANLSTSMEDVEAEMRRLKLELKQTMEMYSNACKEALTAKQKARELQLWKLEEERRLEKARLAEEAALAIAEKEKAKSKAAMEAAEAAQRIAEIESQKRVNAEMKALKESVEKKKALDALAHSDFRYRKYTIEEIEAATEFFSEVLKIGEGGYGPVYKARLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMSNGSLEDRLFRRGNTSTLSWQLRFRIAAEIGTALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQIITAKPPMGLTHHVQRAIEKGTFVQMLDPSIDDWPVQAALSFAKIALNCAELRRKDRPNLGKVVLPELNRLRLLAEETMHLTWEAGSPGHSPNYSQVSLQLEHSSCPNFLHSDEYSRSPPNENP
Length794
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.413
Instability index47.09
Isoelectric point7.58
Molecular weight89306.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19455
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.15|      45|      47|     363|     407|       1
---------------------------------------------------------------------------
  363-  407 (69.95/59.77)	SNACKEALTAKQKARELQLWK.LEEERRLEKARLAEEAAL.AIAEKE
  411-  457 (58.20/48.24)	SKAAMEAAEAAQRIAEIESQKrVNAEMKALKESVEKKKALdALAHSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.54|      27|      27|     278|     304|       2
---------------------------------------------------------------------------
  278-  304 (47.41/30.66)	EFYDYQEASRTATTPR.LSNVSDYESNF
  307-  334 (44.13/28.03)	ESMQFGRNSVDLSSPHnFSYVSQDSDNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.50|      21|      32|     174|     194|       3
---------------------------------------------------------------------------
  174-  194 (34.96/19.63)	KSKISSMRSASRPAPAISPLR
  209-  229 (36.54/20.85)	ESHILPDNSSRVEKPRLEPQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.79|      49|     366|     120|     170|       5
---------------------------------------------------------------------------
  120-  170 (73.27/62.06)	VAKALIEYvSQAGIEVLVVGAST.RTGF......LSKFKATDISAMVSkNAPDF.CSVY
  489-  545 (73.51/52.52)	VYKARLDH.TPVAIKVLRPDAAQgRSQFqqevevLSCIRHPNMVLLLG.ACPEYgCLVY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19455 with Med32 domain of Kingdom Viridiplantae
Unable to open file!