<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19453

Description Mediator of RNA polymerase II transcription subunit 13
SequenceMSGFGNSGKIGLPHRTSQSSVCQLRGQNCYVKVSLGCSKSRGDKPLNPNPDYIRNLPKHQSTEAYAMGRVDQKGPLDLLSVHEKTFIYPPEAVLVPVLQTSFARSSLRSDGNLDILEKSWAEFSGIHTQHCYNSSSNSNNSSISSLSSSSSDSVTTGARDLEADADSSCRQSGLSSNDQMETDCLKLGSKRPRIGMTESYGQAGTVTNAPTEDVYKSNIRSMEVNRAVITGVGNDQIGSNWDWDDDDRGIVMDIQSLLSEFGDFGDFFENDVLPFGEPPGTAESSAIMFGASDCGDVGSSPAGVMDTSDQMLLPVGLPSFDSFNPPLPLVTEEFLSKSQEVTNSAVTSGPSNQTPASSTGEFDHLMKAEALMTFAVEYGAVETPASDSSSVFRNPYLPKSRKVESSNSSQSNYKYAATPPSFPCFGGLDEKTGMPMNLKAHPGGHDSNSMLQLKKYYTHVETREERYGRRLLTHNDSNATNEMSGTSQFGNLYSIKSDKSASRKMTQGVFGGERILLSMKTVLGTEVECSMFQASMLRMRHILLSPTCPATISLSRPTESSVLNQLPDDPSTMADNLSSRYEVKKESIPFKGAGDIDGVMLDGHLNAPVGVWRTVGAPKVSKLATSSIEASPSLTHNLYNEESMLSYGQSQPLQELLDGIPLLVQQATSFVDLALDADGGDCPYSWLALQEHWRRGFCCGPSMVHAGCGGTLASCHSLDIAGVELVDPLSANIHASSVISLLHSDIKSALKSAFGSLDGPLSVTDWCRGRGQSGDVGASADGSSTESNISECRDSSSIVTLSVGEAVSPSQTSVGGSSYLKDGGKVDETCQRRLNQETSGSELEQQQSSRLRSTLFVLPSPALLVGYQDDWLKTSGNSLQLWEKAPLEPYALPKPINYSVICPDIDPLTSAAADFFQQLGIVYETCKLGTHSPQSLGNQMEIDSGKWFSSGFVLLDCPQSMKIESSNASLLGSISDFFLSLSNGWDMTCYLKSLSKALKALKIGQFLFTNQKEGISSPCLVIYVVCPFPEPTAVLKTVIESSIAVGSIILPSDRDKRSLLHSQIGKALSSSAAADEASVSNIPVVSGFSVPKVVVQIVTVDAIFRVTSPPFNELVILKEMAFTVYNKARRISRGSMNDLALSSSLSRSHSVLTPMTSIPTMWKDSVGSRIPGSSIPREGEIDSSLRGGAWENSWQTRTGGLSCDPNRNGDFFYPDEVRYMFEPLFILAESGSLEHGVSPTAFGNSTSETSKIVSDESGGGFMQAANSVGSTDPGSGSQHVGLEPDGLDSSNQKIPSLHCCYGWTEDWRWLVCIWTDARGELLDCNIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACTSSDTGIVKPRDFVITRIGSFYELEYLEWQKAIYSVGGSEVKKWPLQLRRSVPDGMPANTNGTSLDQQEMSLIQERTLPSSPSPLYSSHTKASFMKGGLGQPAARKQLLSGQTSVDNSRGLLQWVQSISFVSVSVDHSLHLVLQADSPSSGTHSGTGPGQSSYIEGFTPVKSLGSTSASYMLIPSPSMRFLPPTPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSTRKDYRNHPKEEWPSVLSVSLIDYYGGNKVTQDKVIRGIAKQAGRTPSSESRDSEIDNHLILASIAAELHALSWMTVSPGFLDRRTALPFHTDMVLRLRRLLHFAEKELSGQPDKSQV
Length1711
PositionKinase
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.276
Instability index49.85
Isoelectric point5.41
Molecular weight184563.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19453
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1885.37|     491|     511|     520|    1029|       1
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    1-  376 (436.46/227.71)	...................................................................................................................................MSGFGNSGKI.....GLPHRTSQ.SSVCQL....R..GQNC.YVK......VSLGCSKSRGdkpLNPNPDYIR.......NLPKHQSTEAYAMGRVDqkgPLDlLSVHEKTFIYPPEAVLVPVLQTSFarSSLrsDGNLDILEksWAEFSGIHTQHCYNSSS..NSNNSSIS.SL........SSSSSdSVTTGARDLEADADSSCRQSG.LSSNDQMETDC...LKLGSKRPRIGMTESYGQAGTVTNAPT............EDVYKSNIRSMEV.NRAVI.....TGVGNDQiGSNWDWddddrgIVMDIQSLLSEFGDF.....GDFFENDVLPFGEP..PGTAESSAImfgasDCGDVGSSPAGVMDTSDQMllpvglpSFDSFNPP...LPLVTEEFLSKSQEVTNSAVTSGPSNQ...TPASSTGE..FD..HLMKAE.A.....LMTFAV....
  521- 1029 (803.88/465.81)	TVLGTEVEC.SMFQASMLRMRHILLSPTCPATISLSRPTESSVLNqLPddpstmadnLSSRYEVKKESIPFKgagDIDGV..MLDGHLNAPVGVWR...TV..GAPKVSKLATSSIEASPSLTHNlyneESMLSYGQSQPLQeLLDGIPLLVQQATSFVDLALDAD..GGDCPYSW......LALQEHWRRG...FCCGPSMVHAGCGG..TLASCHSLDIAGVELVD...PLS.ANIHASSVISLLHSDIKSALKSAF..GSL..DGPLSVTD..WCRGRGQSGDVGASADG..SSTESNIS.EC........RDSSS.IVTLSVGEAVSPSQTSVGGSSYLKDGGKVDETCQRRLNQETSGSELEQQQSSRLRSTLFVLPSPALL..VG..YQDDWLKTSGNSLQLWEKAPL.....EPYALPK.PINYSV......ICPDIDPLTSAAADFFQQ.LGIVYETCKLGTHSP..QSLGNQMEI.....DSGKWFSSGFVLLDCPQSM.......KIESSNASL..LGSISDFFLSLSNGWDMTCYLKSLSKA...LKALKIGQ..FL..FTNQKE.GISSPCLVIYVVCPFP
 1037- 1545 (645.04/347.62)	TVIESSIAVgSIILPSDRDKRSLLHSQIGKALSSSAAADEASVSN.IP.........VVSGFSVPKVVVQIV...TVDAIfrVTSPPFNELVILKEmafTVynKARRISRGSMNDLALSSSLSRS....HSVLTPMTSIPTM.WKDSVGSRIPGSSIPREGEIDSSlrGGAWENSWqtrtggLSCDPN.RNG...DFFYPDEVRYMFEPlfILAESGSLE.HG...VS...P.T.AFGNSTSETSKIVSD.....ESGG..GFM..QAANSVGS..TDPGSG.SQHVGLEPDGldSSNQKIPSlHCcygwtedwRWLVC.IWTDARGELLDCNIFPFGGISSRQDTKGLQCLFVQVLQQ...GCQILQACTS..SDTGIVKPRDFVItrIGsfYELEYLE........WQKAIYsvggsEVKKWPL.QLRRSV........PDGMPANTNGTSLDQQeMSLIQERTLPSSPSPlySSHTKASFM.....KGGLGQPAARKQLLSGQT........SVDNSRGLLqwVQSIS..FVSVSVDHSLHLVLQADSPSsgtHSGTGPGQssYIegFTPVKSlGSTSAS...YMLIPSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19453 with Med13 domain of Kingdom Viridiplantae
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