<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19441

Description Uncharacterized protein
SequenceMKEANQIAEMANNPQPHPSPSVGSMDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPGVPASHLSSSYTFAPSSYGQVTVSHNAMAQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSEVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFEDDERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRKVQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLVEGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKARVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAKKRKRLADDFFDLLHSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKGDAKEKERRRKEDKEKKTARNIVNDIKVQWTIQTKLKKIGLRPTGIAVIAENQKSTHRHLNLITKAGIRDTSETIGTVHVEILTPRNLKTENLVKGKVSRYYHPTNF
Length970
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.726
Instability index53.97
Isoelectric point6.34
Molecular weight109034.51
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19441
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     388.51|      65|      66|     743|     807|       1
---------------------------------------------------------------------------
  436-  521 (50.16/30.09)	...VKDVVVSEKInnaleekaidqeslTYASKQ.....EAK.DAFKALL..E.saNVGSDWT.WDQAM.RV...IINDkrygalrtLGERKQ.AFNE.FLGQKKK
  533-  600 (66.54/42.45)	KAR.EEYKKMLEE..............CLELTS.....STR.WSKAVTMfeD...DERYKAVeREKDR.KD...FFEN........YIDELR.QKERvKAQEQRK
  606-  665 (64.45/40.88)	YRRFLESCDFIKA................NSQWrkvqdRLEtDERCSRL..D...KIDRLEI.............FQE........YI.RDL.EKEE.EEQRRIQ
  681-  742 (65.88/41.96)	RKLVEGHVAAGTL..............TAKTHW.......R.DY.CMMV..K...D..SPPF.LAVAS.NTsgpTPKD........LFEDVA.EELQ.KQYDDD.
  743-  807 (100.13/67.80)	KARVKDAVKLRKI..............CLASTW.....TLE.DLKAAIL..E...DISSPPI.SDVNL.KL...IFEE........LLERVK.EKEE.KEAKKRK
  827-  874 (41.34/23.43)	..............................SAW.......E.DCK.HLL..EssqEFSS..I.GDEDIcKG...IFDE........YVKQLKgDAKE.KE.RRRK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.34|      17|      17|      74|      90|       2
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   44-   63 (26.98/11.42)	PSQQPQQFVsvpPQQFQPVG
   74-   90 (36.36/17.92)	PSQTPQPQI...PQVMQQLP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.24|      39|      40|     213|     251|       3
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  213-  251 (76.37/51.40)	PKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLEL
  254-  292 (74.87/50.24)	PIERADASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.08|      15|      18|     102|     119|       4
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  131-  154 (11.69/ 6.30)	PNNYFpgVPASHLsssytfaPSSY
  184-  198 (20.39/ 6.09)	VGIHV..SQSTSV.......TSAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.06|      18|      18|     342|     359|       5
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  313-  326 (20.48/ 9.34)	.........SHIP.APVPPASKAQ
  333-  356 (24.87/13.07)	STIiqgassSPVPVAPVPSSSKIE
  357-  374 (18.71/ 7.83)	SVV...vsgSDLPVA...TSSTVT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.70|      22|      85|      14|      36|       6
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   14-   36 (41.98/22.82)	PQPhPSPSVGSMDPSQNFPPPMS
  101-  122 (42.71/19.14)	PPP.PSVSLPAAQPNLHVNPGAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19441 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQPSASTATIPPKPTEEALTDWI
2) LAREQVEMASAKGPLSEVSSHIPAPVPPASKAQSGADTPSTIIQGASSSP
3) MKEANQIAEMANNPQPHPSPSVGSMDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQVMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPG
165
294
1
224
343
137










Molecular Recognition Features






MoRF SequenceStartStop




NANANA