<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19440

Description Uncharacterized protein
SequenceMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPQQTLLLSVSDKACRLIGMLFPGLHSSNTPPGLHPSLDKPKKLNEMDMVVFKPQMSSQQQLQLQQQQQQMQPQLQQQQQQNSQLQQQQNPQLQQQQLPHLQQQQLPQLQQKQQQQLPQLQQQQLSQLQQQQQQQQQQQQLQQQSQHPQMQQQQMVGSGMGPAYVQGPGRLQLVSQGQVPSQAPPNMPGGGFMS
Length301
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.04
Grand average of hydropathy-0.867
Instability index86.02
Isoelectric point9.80
Molecular weight34156.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19440
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.02|      34|      63|     161|     196|       2
---------------------------------------------------------------------------
  161-  196 (63.98/16.05)	PQmsSQQQLQLQQQQQQMQPQLQQQQQQNSQLQQQQ
  214-  239 (53.73/ 9.68)	P........QLQQKQQQQLPQLQQQQL..SQLQQQQ
  240-  266 (53.31/ 9.54)	QQ..QQQQQQLQQQSQH..PQMQQQQMVGS.....G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.96|      16|      17|      90|     106|       3
---------------------------------------------------------------------------
   90-  106 (23.97/18.28)	QHGFLGQLQEKKlCAVI
  110-  125 (25.99/14.94)	QQTLLLSVSDKA.CRLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19440 with Med25 domain of Kingdom Viridiplantae
Unable to open file!