<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19435

Description Uncharacterized protein
SequenceMAPPFSSDDNIPTNTTAVAIDKDKNSPHAVRWAIDHLVVSNPYIILIHVRHRNLGESESDYDINQLFIPFRGYCARKAIQLKEVVLDDADICKALMDYVNKNLINNLVIGGATRNGLSRKCKNDISASLIKSAPDFCSVYVISKGKILTMRTAQRPISNTATPPKAPCGMPPPIPSDQIEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSFPNKRSHGSIDFSDQNLDFSVISGPSTGQLPQSSANELHQWKMEEARKFEEARLAGEAALAMAEKEKAKCKAAIEAAEAAKRLAEMEAHRRRQAELKAKKEADEKNRALNALAHNDVRYRKYTIEEIEEATENFEAHNKIGEGGYGPVYKGKLDHTPVAIKVLRPDAAQGKKQFQQEVEVLSCMRHPNMVLLLGACPEYGCLVYEYMFNGSLEDRLFRRGNTPPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPEYQQTGMLTTKSDIYSLGIMLLQIITAKPPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLALKCVELRKRDRPDLGTIIVPELNRLRDLGSSSDSHSHGCQGNSGGYSSDGNTSANGRNSRSMLSADSQV
Length693
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.476
Instability index46.42
Isoelectric point7.90
Molecular weight76364.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19435
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.69|      41|      41|     204|     244|       1
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  159-  201 (50.30/21.48)	.NTatpPKAPC...GMPPPIPSDQIEDDGSrayYARGGS.RNAGADRM
  204-  244 (70.97/32.89)	DNT...PKAPMRDRDRQRSSPANLSFDIDS...AMRAAQ.PSSSQDSL
  247-  287 (55.42/24.31)	DSS..fPNK..RSHGSIDFSDQNLDFSVIS...GPSTGQlPQSSANEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.16|      27|      28|     315|     342|       2
---------------------------------------------------------------------------
  294-  313 (22.63/ 8.57)	E.ARKFEEARLAGEAALAMAE..........
  315-  341 (46.98/30.39)	E.KAKCKAAIEAAEAAKRLAEMEAH...RRR
  344-  369 (27.12/14.21)	ElKAK.K...EADEKNRALNAL.AHndvRYR
  370-  388 (19.43/ 9.28)	......KYTIEEIEEATE..NFEAH...NK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.62|      42|     116|     472|     513|       3
---------------------------------------------------------------------------
  472-  513 (72.58/48.74)	PPLSWRRRFTIAAEIATALLFLHQAKPEPLVHRDLKPANILL
  584-  625 (75.03/50.63)	PPMGIAHHVGRAIEKGTFADMLDPAVPNWPVEEALSFAQLAL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19435 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSDQNLDFSVISGPSTGQLPQSSANELHQWKMEEARKF
2) GSSSDSHSHGCQGNSGGYSSDGNTSANGRNSRSMLSADSQV
3) TAQRPISNTATPPKAPCGMPPPIPSDQIEDDGSRAYYARGGSRNAGADRMSVDNTPKAPMRDRDRQRSSPANLSFDIDSAMRAAQPSSSQDSLSSDSSFPNKRSHGSI
261
653
152
298
693
259










Molecular Recognition Features






MoRF SequenceStartStop




1) RAYYA
185
189