<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19434

Description Uncharacterized protein
SequenceMANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQVPSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQESPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQPWLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRARQSSWEKPLELMTPIERADASTVWKEFTTPEGETICDQEIAFEGYYHNKVTKESKWTIPEELKLAREQAQAGASQGTPSGSGVAPQALVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVSGPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGANTAVTRSSETTATQDTMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEEKRRNIAEYRKFLESCDFIKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASNTSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSSISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEESQEYSYGHKEEKKKEKEKDRKHRKRHAADDGSSDKDDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELGEDGEIQ
Length871
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.981
Instability index58.40
Isoelectric point6.23
Molecular weight97493.75
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19434
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     276.22|      50|      53|     695|     744|       1
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  463-  519 (42.82/24.05)	.........SDWTWEQTMRE..............IINDKRYGALKtlgERKqafneylgqrKKLEAEERRMRQK.KArE........EF
  524-  596 (51.82/30.76)	EESKelTSSMRWSKAQSLFEnderfkaverardrEDLFENYIVDL...ER...........KEREYAAEEKRRN.IA.EyrkflescDF
  661-  695 (43.62/24.65)	..........EDVAE....................ELDKQYHEHK...TRI..........KE.AMKTGKVTMV.YS.W........TF
  696-  745 (74.75/47.84)	EDFK..AAISEDVGSSSISD..............INLKLVYDELL...ERA..........KEKEEKEAKKRQR.LA.D........DF
  750-  800 (63.22/39.25)	HTYKeiTASSDWEESKPLFE..............ESQEYSYGHKE...EKK..........KEK.EKDRKHRKRhAA.D........D.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     158.15|      31|      31|      71|     101|       2
---------------------------------------------------------------------------
   39-   64 (33.99/10.76)	PTQQGQHFVPAasQQF..RP..VG........QVP.S...PN
   71-  101 (63.21/25.39)	QNQQMQFSQPM..QQFPPRPNQPGL.......STP.SQ.QPI
  108-  134 (32.61/10.07)	PPSSYGFAPSS..FGLP....QNNV.......SAP.SQfHP.
  293-  330 (28.34/ 7.94)	APQALVATAVS..AAETPTTAIP.VssntlqdSSPvSV.TPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.46|      16|      16|     208|     223|       3
---------------------------------------------------------------------------
  170-  187 (19.39/ 6.19)	QPPPSS.ADTNANVpsLTP
  208-  223 (29.39/12.65)	RARQSS.WEKPLEL..MTP
  226-  239 (19.67/ 6.37)	RADASTvW.K..EF..TTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.36|      26|      62|     362|     387|       4
---------------------------------------------------------------------------
  331-  347 (22.86/ 9.17)	........ANPS.PTSVSGPTTGP.VA
  362-  387 (45.13/25.42)	VSVTPV.PAVPSRGSTVSAPSVGANTA
  425-  451 (38.38/20.49)	VNMTPVeEKVPDDEPLVYANKLEAKNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.05|      14|      24|     807|     826|       5
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  807-  820 (24.21/ 6.26)	DREESKKSRRHGSD
  832-  845 (23.85/14.11)	DSDSESRHRKHKRD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19434 with Med35 domain of Kingdom Viridiplantae
Unable to open file!