<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19433

Description Uncharacterized protein
SequenceMGKVLLEASKPSSSSASSVSTTTTSTSVTETVNGSHQFKITGYSLSKGLGIGKYIASDTFMVGGYLWAIYFYPDGKSPEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFGRTLESGPYTLKYRGSMWGYKRFFKRTLLEQSDYLKDDCLSVHCSVGVVKSHTEGPKIYSIAVPPSNISHHFGKLLESGKGTDVSFEVDGEVFHAHKLVLAAHSPVFRAQLFGPMKDQNTKQIKIEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWASALMSQHLLAAADRYGLDRLRLICEANLCEDVTINTVATTLALAEQHHCFQLKAVDNSQGSLFLNMKSLKLRTAHHDEKPGLNQPVQLGAVAVMQTDGFEYLKESCPSVLTELLEHVARVNEHSVIVCRHGNEAILDGSDANAFMEVGTVWESVLEQTKSAQDKNSDPLVWAVQLSSRLNSAGVSLPSIDLAHLLVSHICWDNHLPITWKFLEKALTANFVPPMLVLALLSTRVIPKRKFHPTAYRLYMELLRRHAFPLKCQINGLNYQKIMKSIDDVLHLSLIFGVQVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKRSIWPTVTQDMEIDTADNFNETRSAHHDVLYKGNTIIAIEIIVEFLQNKVTSRILFLARRNMPSHWEAFIQQLRVLAAKSVALRNSKHITPEKLLQLTSDTHNVLSRECKRISQQVLHAVMGDGSLTSPSGQWHGTSPSALWLPIDMFLEDAMAGPQVAASGAIDRLAGLVKALQAVNGTTWHDAFLGLWIAALRLVQRERDIIEGPVPRLDTCLCMLLSITTLVVANIVEEEESELIDETDGSPSNPTKEKQTTGRCRKGLISSLQMLGDYEALLTPPQAVCSVANQAAAKAIMFHSGRTVGSGYYECMSINDMPMNCSGNLRHLIIEACISRNLLDTSAYLWPGYVNVRANIPHSVPSQVPGWSSLMKGSPLTPTLINALVATPASSLPEIEKIYEIATKGSDDEKISAASILCGASLVRGWNIQEQVVLFIISLLSPPVPADYSGSESHLIRYAPFFNVLLVGISPVDCIQIFSLHGMVPLLAGALMPLCEVFGSTAPNGSWTLPTGEELTSHAVFSNAFTILLMLWKFDHPPVEHVMRDATPVGSERSPDYLLLVRNSKLSAFGKSAKDHLKIRRMSKILNFCMEPIFMDSFPKLKRWYRQHQKCIASTLSGLVQGTTVHQIVDALLNMMFRKIGRAAQSSTSTTSGSSSSSASGAEDILARLKVPAWDILEGAPYVLDAALTACAHGRIAPRELATGLKDLADFLPATLGTIISYFSAEVTRGIWKPVFMNGTDWPSPLANLSVVLQQIKKFIAATGVDVPSLETGGSSPAMLPLPLAALVSLTITYKLDKSSERSLVLLGPAMSSLGGSCPWPCMPIISALWAQKVKRWNDFLVFSSARTVFHHNSDAVVQLLRSCFTATLGLSPSIMCSNGGVGALLGHGFGSHFSGGMAPVSPGIMYLRSHRTIRDIMFMTEEIVSLLMFSVKEIASRLSQEKMEKLKKTTFGLRYGQVSLGTAMTRVKLAASLGASLVWLSGGLSLVQSLIKETLPSWFISAHTPELDRGEPGGVVSMLRGYALAYFAVLCGTFAWGVDSVSPESRRRPKVLDSHLEFVASALDGKISLGCDYATWRAYVTGFVSLMVGCTHKWVLDVNVDVLKRLGNGLRQWNEEELAIALLGLGGATATGTAAELIVEIGA
Length1746
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy0.089
Instability index41.20
Isoelectric point6.64
Molecular weight191014.30
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19433
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     414.28|     136|     224|    1046|    1206|       2
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 1046- 1206 (214.52/164.31)	VPA.DysgseshLIRYAPF.FNVLLV.....GISPVDCIQifSLHGMVPLLAGALMPLCEVFGSTAPNGSWT..LPTGEELTSHavFSNAFTILLMLWKF......DHPPVEhvMRDATPV................GSERSPDYLLLVRNSKLSAFGKSAKDHlkirrmskilnfCMEPIFMDSFPKLKRW
 1273- 1439 (199.76/110.80)	VPAwD.......ILEGAPYvLDAALTacahgRIAPRELAT..GLKDLADFLPATLGTIISYFSAEVTRGIWKpvFMNGTDWPSP..LANLSVVLQQIKKFiaatgvDVPSLE..TGGSSPAmlplplaalvsltityKLDKSSERSLVLLGPAMSSLGGSCPWP............CMPIISALWAQKVKRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.38|      17|      21|     500|     519|       3
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  500-  516 (29.66/25.99)	FVPPM..LVLALLSTRVIP
  520-  538 (27.72/13.77)	FHPTAyrLYMELLRRHAFP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.97|      13|      21|     121|     133|       4
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  121-  133 (25.61/18.12)	FGRTLESGPYTLK
  145-  157 (21.06/13.35)	FKRTLLEQSDYLK
  193-  203 (14.30/ 6.28)	FGKLLESGKGT..
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.51|      16|      21|     688|     704|       8
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  688-  703 (27.61/18.07)	RNSKHITPEKLL......QLTS
  711-  732 (21.89/ 7.82)	RECKRISQQVLHavmgdgSLTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.76|      30|      30|     947|     976|      11
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  947-  976 (56.96/36.34)	LWPGYVNVRANIP.HSVPSQVPGWSSLMKGS
  978- 1008 (44.80/26.93)	LTPTLINALVATPaSSLPEIEKIYEIATKGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.88|      19|     223|     387|     412|      13
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  387-  406 (25.74/23.17)	PSVL....TELLEHVARVNEhSVI
  413-  435 (26.14/ 6.66)	EAILdgsdANAFMEVGTVWE.SVL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.29|      19|    1244|      16|      34|      16
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   16-   34 (31.14/19.60)	ASSVSTTTTSTSVTETVNG
 1245- 1263 (31.14/19.60)	AAQSSTSTTSGSSSSSASG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19433 with Med33 domain of Kingdom Viridiplantae
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