<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19429

Description Uncharacterized protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPLNTVFMREIAEAYLGFTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTVKDEKIGAKLAAADKKKVEDAIDEAIQWLDNNQLAESDEFEDKMKELESICNPIIAKMYQGAGADMGGMDEDAPASGTGAGPQIEEVD
Length587
PositionUnknown
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index30.24
Isoelectric point4.96
Molecular weight64306.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19429
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.32|      13|      26|      16|      28|       2
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   16-   28 (27.55/18.45)	TTYSCVGVWQHDR
   40-   52 (24.77/15.93)	TTPSYVGFTDTER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.07|      13|      26|      54|      66|       3
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   54-   66 (23.11/14.65)	IGDAAKNQVAMNP
   80-   92 (21.96/13.58)	LGFTVKNAVVTVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.01|      23|      26|     399|     423|       4
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  399-  423 (36.09/33.42)	DNNllGKFELSGIPPAPRGVPQITV
  428-  450 (36.91/26.79)	DAN..GILNVSAEDKTTGQKNKITI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.21|      29|     189|     111|     141|       5
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  111-  141 (41.65/43.16)	GLNVMRIINePTaAAIAYGLDKKATSV.GEKN
  303-  332 (46.57/36.44)	GKELCKSIN.PD.EAVAYGAAVQAAILsGEGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.17|      19|      19|     468|     486|       6
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  468-  486 (30.23/22.93)	EAEKYKSEDEEHKKKVDAK
  490-  508 (31.94/24.68)	ENYAYNMRNTVKDEKIGAK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.63|      13|      21|     509|     523|       7
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  509-  523 (16.10/16.87)	LAAADkkKVEDAIDE
  533-  545 (22.53/15.30)	LAESD..EFEDKMKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19429 with Med37 domain of Kingdom Viridiplantae
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