<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19427

Description Mediator of RNA polymerase II transcription subunit 31
SequenceMASTKESDNASDTPSSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYPHCLYFLELLQNANFRNAMAHPANKEVAHRQQFFFWKNYRNNRLKFILPKPPPEEVPTPAPLPPASAPPQQSLPASNIAMTTAPPAPASTHSPMPYGLPSGSALAKNDMRNSGIDRRKRKHDLKDPDSDEYHFDYHRKEA
Length216
PositionMiddle
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.12
Grand average of hydropathy-0.898
Instability index59.96
Isoelectric point7.78
Molecular weight24939.71
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19427
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.20|      25|      28|      31|      57|       1
---------------------------------------------------------------------------
   31-   55 (44.06/16.39)	FLLEL....EFVQCLANPTYIHYLAQNRY
   61-   80 (32.42/12.12)	FIGYL....KYLQYWQRPEYPHCL.....
   82-  109 (28.72/10.17)	.FLELlqnaNFRNAMAHPANKEVAHRQQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.48|      17|      23|     134|     150|       2
---------------------------------------------------------------------------
  134-  150 (34.93/12.91)	TPAPLPPAS..APPQQSLP
  157-  175 (30.55/10.58)	TTAPPAPASthSPMPYGLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19427 with Med31 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ILPKPPPEEVPTPAPLPPASAPPQQSLPASNIAMTTAPPAPASTHSPMPYGLPSGSALAKNDMRNSGIDRRKRKHDLKDPDSDEYHFDYHRKE
123
215










Molecular Recognition Features






MoRF SequenceStartStop




1) GIDRRKRKHDLKDPDSDEYHFDYHRKEA
2) YRNNRLK
189
115
216
121