<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19424

Description Uncharacterized protein
SequenceMIAHDLAASIQRGSLDWERALRCIRHAIRSTPSPDWWKRVLVVAPFYRGSVPTPEINCWQEWLVFSDIFFFLMKSGCIDFVDFIDKLGSRLSASDHHILNTNHVTWLLAQIIRVEHVMTALNTDSRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGERMMDYMSMDDKSIGMFWVVSYTMAQPACETVMNWLSSGGVTELLPGANVQPNERFMVMREVSPLPISLLSGFSMNLYLKLVFQMEESLFAGQVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPAVTLLVLEIVNYRLLPLYRYQGKCKPLMYDVTKIISALKGKRGDHRVFRLAENLCINLILSLRDFFSVKREGKGPTEFTETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHTWSEKTLRFFPSILRDLLMTRTDKRGLAIQEWLQSETTVINQCTQLLSSSAEPNYVMTYINHSFPQHRQYLCAGAWILMQGHPENINSGNLARVLREFSPEDVTSNIYTMVDVLLHHIHIELQHGHSLQDLLLKTCANLAFFVWTHELIPLDILLLALIDRDDDPHALRIVMKFNAENAYYFCFKISLLDRQELQQRVKLYCMNRGPPEHWLYTGIFKRSDLQKALGNHLSWKERYPTFFDDIVARLLPVIPLVVYRLIENDAIESADRILGMYSLFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPAICPPLEYFATLLLALVNNVIPPLNSNSRTGSMGDASNNSVRGPHNKTPATPQSGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLVQIVVNIQPTLIQSSNGLHGASSGAVQGSVLPTSPSGGSTDSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGLLLAQLPPEFHLQLYMEASRIIKESWWLTDGKRSLSELDSAVSYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIQQLRPVTSVAMLRIAFRIMGPLLPRLVTAHNLFNKNVKGEYWRKKHMQIRVHEKLKVLEELEISKRWGIDLKEILSLLLNTLVDVFGKNTQPPVPVEASEITDLIDYLHHIIHYEGQAGPVQANSKPRPEVLSICGRAAESLRPDVQHLLSHLKPDVNSSIYAATHPKIAQNPSS
Length1224
PositionTail
OrganismGossypium barbadense (Sea-island cotton) (Egyptian cotton)
KingdomViridiplantae
Lineage
Aromaticity0.09
Grand average of hydropathy-0.051
Instability index44.04
Isoelectric point7.65
Molecular weight138499.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19424
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.12|      19|      21|      29|      47|       1
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   14-   29 (20.51/10.73)	...SLDW..ERALRCIRHAIR
   30-   48 (36.74/26.12)	STPSPDW..WKRVLVVAPFYR
   50-   69 (22.87/12.97)	SVPTPEIncWQEWLVFSDIF.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.40|      36|     157|     838|     873|       2
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  838-  873 (61.32/39.81)	GPANASEGQKAF.YQIQDPGTYTQLVLETAVIEILSL
  993- 1029 (56.09/35.79)	GKRSLSELDSAVsYALLDPTWASQDNTSTAIGNIVAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.54|      19|     556|     482|     500|       3
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  482-  500 (34.09/21.14)	QEWLQSETTVINQCTQLLS
 1039- 1057 (34.44/21.43)	QEWLEGTHVIIQQLRPVTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.48|      16|      23|     272|     287|       4
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  272-  287 (26.66/15.91)	M.NLYLKLVFQMEESLF
  297-  313 (21.91/11.75)	MvETYTRLLLIAPHSLF
  314-  328 (22.91/12.62)	R.SHFSHLA.QRNASLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     253.43|      83|     345|     158|     267|       6
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  173-  267 (127.03/127.40)	REYLNNE..QLQKGKQidewwRQVSKGE..RMMDYMSMDDKSIGMfwvvsYTMAQPACETVMNWLSSG.GVTELLpGANVqPNERFMV.MREVSPLPISLL
  520-  608 (126.40/69.11)	RQYLCAGawILMQGHP.....ENINSGNlaRVLREFSPEDVTSNI.....YTMVDVLLHHIHIELQHGhSLQDLL.LKTC.ANLAFFVwTHELIPLDILLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.32|      12|      15|     729|     743|       8
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  729-  741 (18.64/18.28)	FLAYHPLRFtFVR
  747-  758 (22.68/ 8.65)	FYGHLPGKL.IVR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.46|      17|      17|     774|     790|       9
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  774-  790 (32.37/19.74)	FPQHISSSNPAICPPLE
  792-  808 (27.09/15.26)	FATLLLALVNNVIPPLN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.82|      12|      22|     658|     669|      11
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  658-  669 (25.93/14.81)	GPPEHW..LYTGIF
  679-  692 (20.89/10.44)	GNHLSWkeRYPTFF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.31|      12|      23|     438|     449|      18
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  438-  449 (19.56/10.59)	YLQTMLEQILAT
  461-  472 (20.75/11.66)	FFPSILRDLLMT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19424 with Med23 domain of Kingdom Viridiplantae
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