<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19413

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDKIVDVHFERVEKALATLVESITKYNPQAVQAIELTSADEELGNGLKQLETHQNNYRRLESLKASSSALDAQIRDTIRTLWNTRKDITSTSTTAATDGPQYDVNYEELLSYARRISKMTLPPASILSRLEAANAESGPSTGEAVNTPNTTAAPTPVAGGSTPNPNLTSNGAPTPAAPSQSQGQQGTQATANSGATALPKEWTQFLDPLTGHVFLPWPTEDKIRVGALASIQNLVEEGIDPRGYDPAEEEARRQREEQERREQEEREAVEREENLRKMREEQARVARERQRERERLQEEALRRGSTGADGPSPGGAAASNEPQKKQFQFMGGDLDDDDDD
Length340
PositionMiddle
OrganismDiaporthe helianthi
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Diaporthales> Diaporthaceae> Diaporthe.
Aromaticity0.04
Grand average of hydropathy-0.935
Instability index50.27
Isoelectric point4.80
Molecular weight37393.43
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19413
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.09|      15|      16|     142|     156|       1
---------------------------------------------------------------------------
  147-  163 (24.09/11.34)	TPNTTA..APTPvaGGSTP
  164-  180 (20.99/ 8.94)	NPNLTSngAPTP..AAPSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.24|      21|      25|     252|     276|       2
---------------------------------------------------------------------------
  255-  276 (33.98/23.59)	REEQER..RE.QEEREAVErEENLR
  279-  302 (29.26/ 9.32)	REEQARvaRErQRERERLQ.EEALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.00|      19|      30|     206|     224|       3
---------------------------------------------------------------------------
  206-  224 (35.43/16.98)	LDPLTGHVFLPW...PTEDKIR
  231-  252 (26.57/11.35)	IQNLVEEGIDPRgydPAEEEAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19413 with Med4 domain of Kingdom Fungi
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