<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19404

Description "DNA helicase, ATP-dependent"
SequenceMRQDRSSWGEGGVAKVELPKVNWSQHVEAHDNFLHQKKFLSSNFLLSLATQRPPSESQDPMATSLAACQSSQRLPNSLVEKAWHVLSSVQISSRNYVKPGKTIYVKGIGTENFHDVGKTTLRCSYDNDRTSAHAQKHQHYGATNARVSEPASFAGSYCPSSNVEAAEAGKSVGRQRHIRASTVYSSDHQDLCGSVGNHNVHAGQVKESEKVLVTDMDDDEILESIDVDQIVEQYQSSCTPQPSMSKLPPITPSINKSNFVRLDESCLPPKLCSTCSHGFKLGTCPEAAHHLQEMKDMLISISNELIDNFDDLSPAQTEKLRQDRLELNKQIQQLERYIRSNSVDEERQKSHFFASTTPRSFHYETPQTTASRIDPWKFDSQVHLGNEPGVYESCNSDSYVDRFGVLPSIVEREPYIPKLIEVNYIEGSNNKKWSNRDFPWTKKLEANNKKVFGNHSFRPNQREVINASMSGCDVFVLMPTGGGKSLTYQLPAIICQGLTLVVCPLVSLIQDQIMHLFQANIPAAYLSANMEWTEQQEILRELISDNCKYKLLYVTPEKVAKSDALLRHLESLHSRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPSTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRRVSTTVKLCFNVAAIILYSVIPKTKKCLDDIHKFIKESHYEECGIIYCLSRMDCEKVAERLQECGHKAAFYHGSMDSSQRAFVQKQWSKDEVHIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQQSSCVLYYSYSDYIRVKHMISQGVIEQSPFPSRNNRVNATNSGRILETNTENLLRMVSYCENDVDCRRLLQLIHFGEKFDPSTCKKTCDNCLNIKSCVEKDVTETAKQLVELVKLTGQQFSSSHVLEVYRGSFSQFVRKHKHDTLGLHGAGKHLAKGEASRILRHLVIEDILVEEVKKSDVYGSVSSVLKVNQSKAYDLCSGRRTFVLRFPSSVKVPKQSKAGVTPAKGSLLLEKLSPQIDSPVQPQSKEDLILSDMIFSSLRKLRSEILKEASEAGEGLMAYHIFLNASLQEISRRIPKTKEELLEINGIGKGRISKYGDQVLQTIESTIKDYMKTKNSSSSNESTDSGKRRRAADQSPNLEDFEFNSTGRSKKMATKRQNNVAEACNNMEQNYYSQYIDDDLDFEDNDFDSNGSGKKTNQNGSGRVLPSWSTPRNV
Length1227
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.07
Grand average of hydropathy-0.517
Instability index54.27
Isoelectric point8.03
Molecular weight137968.40
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19404
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.12|      12|      16|      91|     102|       1
---------------------------------------------------------------------------
   91-  102 (21.84/11.74)	ISSRNYVKPGKT
  108-  119 (22.28/12.11)	IGTENFHDVGKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     288.29|      91|     318|     766|     860|       3
---------------------------------------------------------------------------
  766-  860 (150.31/142.77)	IHHSLPKS......IEGYHQecGRAGRDGQQSSCVLYYSYSDYIRVKHmiSQGVIEQSPFPSRNNRVNATNSGRILETN.TENLLRMVSYCENDV..DCRRLLQ
 1083- 1182 (137.97/114.99)	ISRRIPKTkeelleINGIGK..GRISKYGDQVLQTIESTIKDYMKTKN..SSSSNESTDSGKRRRAADQSPNLEDFEFNsTGRSKKMATKRQNNVaeACNNMEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.34|      14|      16|     379|     392|       4
---------------------------------------------------------------------------
  379-  392 (26.53/15.33)	DSQV.HLGNEPGVYE
  397-  411 (20.81/10.56)	DSYVdRFGVLPSIVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.74|      19|      24|     679|     699|       7
---------------------------------------------------------------------------
  668-  696 (22.84/20.62)	ILYsvipktkkCLD..DIHKfIKEsHYEECG
  697-  717 (32.91/18.50)	IIY........CLSrmDCEK.VAE.RLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.13|      17|      24|     171|     188|       9
---------------------------------------------------------------------------
  171-  188 (25.59/19.58)	SVGrQRHIRASTVYSSDH
  194-  210 (29.54/17.62)	SVG.NHNVHAGQVKESEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.49|      13|      17|     247|     262|      10
---------------------------------------------------------------------------
  247-  259 (24.51/17.91)	LPPITPSINKSNF
  267-  279 (26.98/11.28)	LPPKLCSTCSHGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.29|      10|      24|     919|     928|      12
---------------------------------------------------------------------------
  919-  928 (17.48/10.00)	RGSFSQFVRK
  945-  954 (16.81/ 9.34)	KGEASRILRH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19404 with Med34 domain of Kingdom Viridiplantae
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