<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19399

Description Heat shock protein 70 family
SequenceMAAKTEKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPENTVFDAKRLIGRRFSDPSVQGDMKLWPFRVIPGPGDKPMIVVRYKGEEKRFSPEEISSMVLTKMRETAEAFLGRAINNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASKKGEQNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVGEFRRKHKKDISGSARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDLFRKCMEPVEKCLRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELAGIPPAPRGVPQINVTFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKDDIEKMVKDAERYKAEDEEVKKKVEAKNTLENYAYNMRNTVRDEKFAGKLDPGDKERIEKAVEETIEWLEGNQLAEVDELEDKLKELEGVCNPIISKMYQSGGGAGAGDVPMGDGYGGGSGGSGTGSGPKIEEVD
Length652
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index33.38
Isoelectric point5.20
Molecular weight71406.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19399
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     189.77|      53|     104|     452|     506|       1
---------------------------------------------------------------------------
  407-  447 (43.05/18.87)	................GLETAG.GVMT.VliprNTTIP.TKKEQIFS.TY.SDN...QPGVLIQV
  452-  506 (83.23/48.15)	RARTRDNNLLGKFElaGIPPAPRGVPQ.I....NVTFD.IDANGILNVSA.EDK...TAGVKNKI
  555-  611 (63.48/31.60)	RNTVRDEKFAGKLD....PGDKERIEKaV....EETIEwLEGNQLAEVDElEDKlkeLEGVCNPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.06|      18|      41|     336|     355|       3
---------------------------------------------------------------------------
  336-  355 (25.29/24.43)	VHEVVLVGGSTRipKVQQLL
  380-  397 (29.78/20.14)	VQAAILTGEGDE..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.64|      13|     106|      39|      64|       4
---------------------------------------------------------------------------
   41-   54 (20.66/23.69)	PSYVAFtDTERLIG
   65-   77 (23.98/ 6.09)	PENTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.30|      32|     106|     174|     205|       5
---------------------------------------------------------------------------
   95-  130 (40.73/27.26)	RVIPGPGDKPmivVRYkGEE.KRFSPEEISSMVLTKM
  140-  172 (42.07/28.42)	RAINNAVITV...PAY.FNDsQRQATKDAGAIAGLNV
  174-  205 (47.50/33.13)	RIINEPTAAA...IAY.GLD.KKASKKGEQNVLIFDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19399 with Med37 domain of Kingdom Viridiplantae
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