<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19393

Description "Phosphorylase kinase, gamma catalytic subunit"
SequenceMAPQYYPDDTIPTVNSTVVAVEKDNKNSKAAVRWAIEHLVISNPFIILIHVRHKNYQSTSNGDSGESDLHAVFSPFRAYCARKAVQMKEVVIDDSDVSKAILDYVNKNCITNVVAGASQRNALTRKFKGIDVPSSIVKSAPDFCSVFVISKGKLVTARNAQRPALNSAAPPRQPSPQGLPPCIPTEYGDAEHGARPHTRGVLRSGGPEKIIPVRERTKSAPSLLLLDNIDLPSNGSGSSYSRDSTSDESDVLAAFGTFGSVDITGKNFDFGAAPSSPRHSSARQSTQRDIEAEMKRLKLELKQTMDMYSSACKEAIAAKNKAKELSEWKLEESRKFEEARSAEEAALAAAEMEKAKCKAALEAAEIAQKMAEKEAQRRKQAEMMARREAEEKNRALSALSKNEFRYRRYTIEEIKVATDMFSESMKIGEGGYGPVFKGKLDHTAVAIKLLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMNNGSLDDRLFRRGNSPPISWRRRFKIASEVATALLFLHQTKPEPLVHRDLKPGNILLDRNFVTKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGILLLQIITARPPMGLAHHVKKAIEKGRLADVLDPAVPDWPIEETLAFANLALNCAELRKKDRPELGSVIVPELKRLKDFGKNFAPDVSQAQSSSNPPTE
Length710
PositionTail
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index47.24
Isoelectric point8.89
Molecular weight78428.57
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19393
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.63|      12|     425|     265|     276|       1
---------------------------------------------------------------------------
  265-  276 (24.32/18.54)	GKNF..DFGAAPSS
  691-  704 (18.31/11.96)	GKNFapDVSQAQSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.23|      30|      30|     293|     322|       2
---------------------------------------------------------------------------
  293-  322 (49.67/32.28)	EMKRLKLELKQTMDMYSSACKEAIAAKNKA
  324-  349 (33.58/19.50)	ELSEWKLEESRKFEEARSAEEAALAA....
  351-  367 (17.19/ 6.49)	.............EMEKAKCKAALEAAEIA
  374-  395 (34.79/20.46)	EAQR.....RKQAEMM..ARREA.EEKNRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.46|      27|      49|     476|     504|       6
---------------------------------------------------------------------------
  476-  504 (45.26/44.39)	MVLLLGACPEYgcLVYEYMNNGS.LDDRLF
  528-  555 (45.20/34.60)	LLFLHQTKPEP..LVHRDLKPGNiLLDRNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.97|      19|     181|      56|      76|       8
---------------------------------------------------------------------------
   56-   76 (31.55/25.85)	YQSTSNGDsgESDLHAVFSPF
  240-  258 (34.42/21.18)	YSRDSTSD..ESDVLAAFGTF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19393 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KNFDFGAAPSSPRHSSARQSTQRDIEAEMKR
2) NAQRPALNSAAPPRQPSPQGLPPCIPTEYGDAEHGARPHTRGVLRSGGPEKIIPVR
266
159
296
214










Molecular Recognition Features






MoRF SequenceStartStop




1) DFGKNFAPD
689
697