<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19389

Description WW domain containing protein
SequenceMTTPAPNLGSTPSWVPPGVSFTTAPGAPGTPTPGTPGPPGIVHSTQVSPNLTVPLGAADPSSAFLRPALLAGPPVASNLAMQPQMGVSYSSLPTVAAPPQGLWLQPLQMGGVPRLPTMPYPATFPGPFPMVARGMPPSVPLPDSQSPGVTPVVNTGAVPMSTASSIQVAGSSGIRTELPASGDRSHVNDVGRTTQVTVGVNEQSDAWTAHKTETGVVYYYNALTGESTYDKPPDFKGEAEKVSVQPVPVSMVNLPGTDWVLVSTSDGKKYYYNNKTKVSCWQIPTEVTESRKKQDVDIPKEHSISVPSTNVLAEKGSSPVILNAPAINTGGRDAMALRPSNAQGSSSALDLIKKKLQEFGAPVTSSPGAVQSGLAASESNGSRAVDAIAKGQQSENSKDKLKDANGDGNVTDSSSDSEDADSGPTKEECFIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSTRRSLFEHYVKTRVEEERKEKRAAQKAAIESFKQLLEEASEDIDHKTDYQIFRKKWGDDPRFLALDRKDREHLLNERVLPLKRAAEEKARAIRAATTSSFKSMLREKGDITVNSRWSRVKDSLRDDPRYKSVKHEDREVLFNEYLSDLRAADEEAEKEAKAKREEQDKLRERERELHKRKEREEQEMERVRIKVRRKEAVVSFQALLVETIKDPQCLKRQPVPLTVLIPAQELEYTFTAGPKLDIHASWTESKPKLEKDPQARASNPDLDSSEMEKLFREHMKMLHERCAREFKALLAEVLTVDAAAQETDDGKTVLNSWSTAKRLLKPDPRYNKMPRKEREALWRRYTEDILRKQKSEKSELDPKEDKKVDSRSRSSADYGRLPSGLRGPHERR
Length863
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.06
Grand average of hydropathy-0.739
Instability index52.77
Isoelectric point8.82
Molecular weight95597.75
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19389
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.36|      21|      22|     106|     126|       1
---------------------------------------------------------------------------
   17-   37 (26.35/10.47)	PgVSFTTAPGAPGTPTPG.....T.PG
   44-   66 (20.82/ 6.68)	S.TQVS..PNL.TVPLGAadpssAFLR
  106-  126 (42.19/21.34)	P.LQMGGVPRLPTMPYPA.....TFPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     175.65|      34|      66|     458|     491|       2
---------------------------------------------------------------------------
  471-  509 (44.55/23.38)	RSLFEHYVKTRV.......EEERKEKRAaqkaaiE.SFKQLL......EEASE
  510-  534 (36.70/18.10)	D..IDH..KTDY.......QIFRKKWGD......DPRFLAL...........D
  535-  583 (31.36/14.50)	RKDREHLLNERVlplkraaEEKARAIRA....atTSSFKSMLrekgdiTVNSR
  584-  605 (28.03/12.27)	WS........RV.......KDSLR.........dDPRYKSV.......KHEDR
  647-  675 (35.01/16.96)	RKEREEQEMERV.......RIKVRRKEA......VVSFQALL...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     344.64|      88|     106|     138|     225|       3
---------------------------------------------------------------------------
  138-  223 (135.61/84.90)	.....SVPLPDSQSP....GVTPVVNT................GAVPMSTASSIQVAGSSG...............IRTELPASGDRS.....HVNDVGRTTQVTVGVNEQSDAWTAHKTETGVVYYYNAL
  224-  327 (105.93/64.51)	TGestYDKPPDFKGEaekvSVQP.VPV................SMVNLPGTDWVLVSTSDGkkyyynnktkvscwqIPTEVTESRKKQ.....DV.DIPKEHSISVP....STNVLAEKGSSPVILNAPAI
  329-  437 (103.10/62.56)	TGgrdAMALRPSNAQ....GSSSALDLikkklqefgapvtsspGAVQSGLAAS.ESNGSRA...............V..DAIAKGQQSenskdKLKDANGDGNVTDSSSDSEDADSGPTKEECFIQFKEML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.45|      53|     105|     685|     756|       4
---------------------------------------------------------------------------
  685-  747 (67.99/75.60)	LKRQPV....PLTVLIPAQELEytftAGpKlDIHASWTESKPKLEKDPqaRASNpdLDSSEMEKLFR
  758-  814 (87.45/43.50)	AREFKAllaeVLTVDAAAQETD....DG.K.TVLNSWSTAKRLLKPDP..RYNK..MPRKEREALWR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19389 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEEAEKEAKAKREEQDKLRERERELHKRKEREEQEMER
2) KQKSEKSELDPKEDKKVDSRSRSSADYGRLPSGLRGPHERR
3) MTTPAPNLGSTPSWVPPGVSFTTAPGAPGTPTPGTPGPPGIVHSTQVSPNLTVPLGAA
4) PVTSSPGAVQSGLAASESNGSRAVDAIAKGQQSENSKDKLKDANGDGNVTDSSSDSEDADSGPTK
5) SWTESKPKLEKDPQARASNPDLDSSEMEKL
6) VAGSSGIRTELPASGDRSHVNDVGRTTQVTVGVNEQSDAW
620
823
1
362
716
168
657
863
58
426
745
207










Molecular Recognition Features






MoRF SequenceStartStop




1) ALWRRYTEDILRKQKS
2) DLIKKKL
811
350
826
356