<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19388

Description Heat shock protein 70 family
SequenceMAGSWRARGSLIVLAIVFFGCLFAISIAKEEASKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTETERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQKDMKLFPYKIVNKDGKPYIQVKIKDGEVKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPGLSYFLVLCTAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDGGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVKEAEEFAEEDKKVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETATKEALDWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGGSADDDESHDEL
Length675
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.07
Grand average of hydropathy-0.404
Instability index28.51
Isoelectric point5.20
Molecular weight74393.62
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19388
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.75|      17|      21|     592|     611|       1
---------------------------------------------------------------------------
  595-  611 (28.23/20.61)	INDKDKLA....DKLESDEKE
  613-  633 (22.52/ 7.25)	IETATKEAldwlDDNQSAEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.05|      15|      21|      69|      89|       2
---------------------------------------------------------------------------
   69-   84 (23.40/25.59)	ITPSWVAFtETERLIG
   93-  107 (26.64/10.79)	VNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.87|      21|      27|     232|     252|       3
---------------------------------------------------------------------------
  232-  252 (39.04/21.16)	GGEKNILVFD....LGGGTFDVSIL
  256-  280 (30.82/15.30)	GGVFEVLATNgdthLGGEDFDQRIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.79|      43|     166|     359|     405|       4
---------------------------------------------------------------------------
  359-  405 (62.38/48.42)	VKkaMEDAGLEKSQihEIVLVGGSTRIPK..VQQLLKDYFDGKEPNKGV
  530-  574 (64.41/38.08)	VK..AEDKGTGKSE..KITITNDKGRLSQeeIERMVKEAEEFAEEDKKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.81|      15|      20|     426|     440|       6
---------------------------------------------------------------------------
  426-  440 (26.02/17.99)	GGEETKDILLLDVAP
  449-  463 (27.79/19.74)	GGVMTKLIPRNTVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.39|      16|      30|     138|     165|       7
---------------------------------------------------------------------------
  127-  149 (17.39/11.84)	VNKDGKpyiqvKIKDGEVKVfsP
  160-  180 (20.00/13.60)	MKETAEaflgkKIKDAVVTV..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.72|      34|     195|     293|     327|       8
---------------------------------------------------------------------------
  293-  327 (50.90/36.07)	KDISKDNRALGKLRREA.ERAKRAlSSQHQVRVEIE
  489-  523 (56.81/36.06)	RSLTKDCRNLGKFDLTGiPPAPRG.TPQIEVTFEVD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19388 with Med37 domain of Kingdom Viridiplantae
Unable to open file!