<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19386

Description ATP-dependent DNA helicase
SequenceMEDEEILLEELLNVEVEIQDVEEQIKALLEKQESLYHRQSELRTLLEAAKGSGDRVNDGVPTVVENWSGSFEWDSQADDVRFNVFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPALLRNGVALVVSPLLSLIQDQVMGLAALGISANMLTSTTSKDEEKFIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLLSIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVIALTATATQKVQNDLMEMLHIPKCVKFVSTVNRPNLFYTVREKSSVGKVVNDEIAEFIQEFYLNNESGIVYCFSRKECEQVAKELCARGISADYYHADMDVNAREKVHTRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSQCLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQTRRQCRRSSIFRHFAEPLKDCNGMCDNCAFSSEVKEVDVSRHAKLMVSLLQDTQENDQRLTMLQLVDKLKTKHKEVGTDLKKEEMEQLVIQLILVRVLKEEFQHTAYATNAYVTLGPLARQVLQGKRNVTLEICSEQKKVAHMKSVKHSLQYSGLELKLDELRRELSSIHGGIFPHSILSSQQICILSDQKPNSLGQLEKIIGKLKTEKYGSKILQQINKYSDLDEMKEQGNEERATKRLKTKKALVVIESSDEDE
Length703
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.07
Grand average of hydropathy-0.383
Instability index41.43
Isoelectric point6.68
Molecular weight79769.54
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19386
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.95|      25|      31|     496|     526|       1
---------------------------------------------------------------------------
  502-  526 (40.27/32.46)	ENDQRLTMLQLVDKLKT..KHKEVGTD
  531-  557 (34.68/12.50)	EMEQLVIQLILVRVLKEefQHTAYATN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.69|      27|      32|     629|     660|       2
---------------------------------------------------------------------------
  629-  655 (45.97/35.55)	QQICILSD.QKPNSLGQLEKIIGKLKTE
  663-  690 (41.72/20.32)	QQINKYSDlDEMKEQGNEERATKRLKTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.94|      24|     121|     305|     328|       4
---------------------------------------------------------------------------
  305-  328 (45.80/26.36)	FIQEFYLNNESGIV.YCFSRKECEQ
  430-  454 (42.14/23.75)	FYENSGLQNLYDIVrYCQTRRQCRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19386 with Med34 domain of Kingdom Viridiplantae
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