<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19377

Description Heat shock protein 70 family
SequenceMASKGEAKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPAVQSDMKLWPFKVVPGPGDKPMIVVQYKGEEKQFAAEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMAPVEKCLKDAKIDKGQVHDVVLVGGSTRIPKVQQLLIDFFNGKELCKSINPDEAVAYGAAVQAAILSGDGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPAKKEQVFSTYSDNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDANGIVNVSAEDKTAGVKNKITITNDKGRLSKDEIERMVQEAEKYQAEDEQVKKKVEARNALENYAYSMRNTIKDEKIAGKLSPGEKEKIEKAIEEATEWIERNQLAEVDEFEDKLKELEGLCNPIIAKMYQGGDAGMGPGGAGGFRGKPSSAGPGSGAGPTIEEVD
Length653
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.06
Grand average of hydropathy-0.377
Instability index31.92
Isoelectric point5.37
Molecular weight71278.12
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19377
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.24|      18|      74|     512|     529|       2
---------------------------------------------------------------------------
  512-  529 (30.44/19.93)	DK..GRLS...K.DEIERMVQEAE
  562-  584 (17.38/ 8.31)	EKiaGKLSpgeK.EKIEKAIEEAT
  588-  606 (22.43/12.80)	ER..NQLA...EvDEFEDKLKELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.66|      51|     189|     170|     230|       3
---------------------------------------------------------------------------
  170-  230 (60.57/78.60)	GLNVMRIINePTaAAIAYGLDKKAS.RSGEKNVLIFDLggGTFDVSLLTIeeGIfevKaTAG
  362-  413 (84.09/60.44)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGDGNEKVQDL..LLLDVTPLSL..GI...E.TAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.85|      18|      21|      38|      55|       4
---------------------------------------------------------------------------
   16-   33 (18.49/11.66)	....TTYSCVGVWQNDRveIIA
   38-   55 (32.65/27.02)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.72/18.42)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.25|      18|      19|     112|     129|       5
---------------------------------------------------------------------------
  112-  129 (28.40/16.99)	KGEEKQFAAEEISSMVLT
  132-  149 (27.85/16.55)	KEIAEAFLGQTIKNAVIT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19377 with Med37 domain of Kingdom Viridiplantae
Unable to open file!