<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19369

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMNEKLQISLDKLQLKRLEAIEENGAERFPTDVGYDEKRLSLIRRIDFAWAVEKDDKKKQKKSAKESSTPWPWQSMVENLQLAQQELSVILDLINTVEANDAVTVASMTRPKPLPNEVLSDLAVSAATKLQCFRSLGKYFKQSAKALEQQVSREARFYGALIRLQQNWKVKRQRVAAPSSGNEGFTIDLFDNLLYDPASVYRPSSLSMVRVDHDPAGMLAINLPPSSCRSLQFGFFGTHPCDSTETSYIKVRSSDQHNSRESEKDAGSDDECIIKEMHLLLRQVHQTIFDEQVFDLVNREAFNQSFGVNVTGIRENYLQLSIGQGNSVFISLVPSSQGDQAVDSAGNQDLENAILPLDTLDGVKLPEENSDSSTKELGIPDRTSCEIYLQQIFHENIFSRAKDKPVLTVARISSQTAKEGSSLLGHFCMSLAHRIFSKKVLRVLENLVSGVPYLQLLSHPTWHSRTSSWTLFMKIPQSILYAGTQTPTSDLHYVKTTTKSQFRTKVVVTDDFITVEGEGAPSVVGLFKGNSQESSSMKRYECNLQDLPVIILQQVAGQIIRWLHEEALMVGIKVNRDFLSLSFELEQGETLSLTAHVDPEDSQGCISWWLIMEDGFAEEGKLHLDLSDGVSEYRKFLGHLSLDVLYSTLMDLILQSPINNTRAESSTKLLKYPSQVSYNRALLLPYEDFWLGVVDWSREKPSESYHLGIAEDYKSECGSQEFQVFILDSLSKGRGELDCANGFCS
Length744
PositionHead
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.08
Grand average of hydropathy-0.330
Instability index48.57
Isoelectric point5.31
Molecular weight83618.57
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19369
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.69|      60|      68|     387|     451|       1
---------------------------------------------------------------------------
  387-  451 (87.53/67.01)	YLQQIFHENIFSRAKD.....KPVLTVARISSQTAKegSSLlgHFCMSLAHRIFSKKVLrVLENLVS....GVP
  452-  520 (94.17/55.88)	YLQLLSHPTWHSRTSSwtlfmKIPQSILYAGTQTPT..SDL..HYVKTTTKSQFRTKVV.VTDDFITvegeGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     171.72|      52|     400|     168|     344|       2
---------------------------------------------------------------------------
  288-  344 (76.28/199.72)	FDEQVFDLvNREAFNQSFGVnvtGIRENYLQLSIGQGNSVFIsLVPSSQGDQAVDSA
  688-  739 (95.44/20.38)	FWLGVVDW.SREKPSESYHL...GIAEDYKSECGSQEFQVFI.LDSLSKGRGELDCA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.40|      29|     269|     257|     287|       5
---------------------------------------------------------------------------
  257-  287 (45.99/29.53)	NSRESekDAGSDDECIIKEMH.LLLRQVHQTI
  529-  558 (46.41/24.56)	NSQES..SSMKRYECNLQDLPvIILQQVAGQI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19369 with Med17 domain of Kingdom Viridiplantae
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