<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19366

Description WW domain containing protein
SequenceMANNPQISGVQSLRPPIGGTMDPPQSLPPMSFQFRPAVPAPQSQQFIPVSSQHFQPIGRGVPPINVAMPPCPPQAPQPFYSQPMQQFPIRAGQLAQDMLPPQSIPLPVAHPNNHPLPVAHPNSHPLPIAHPQPSIRAPINFAPSVAGPGTPLSSSHIFAPTNSQIQLSFIDSTQYQSISQPHPANVSSDGQPMLSTESQRSASVTPQQQTFEKSSMTNIIDPVSSTQPNLNAEALSEWREHTSPDGRKYYYNRRTKLSSWEKPIDLMTPIERADASTNWKEFTSPDGKKYYYNKVTKESKWVIPEELKLAREQLAKASLKEAQERMTCSAPDTASSPKVEPAPPADTSSKAQGITSSPVSVEPVAAVGELQAVVVSGSSSSPVADSTTRTGADGDHGSMSVASTSDTSTGIVGAVTEPMNNSNSSTQDITTSVGVSAHDKEEASKDATSEKSNEITPEDKAVDREPLVYANKQEAKNAFMMLLESANVGSEWTWDRAMRVIITDKRYGALKTLGERKQAFNEFLSQRKKMDAEEKRSKQKKAREEFKKMLEESTELTSSARWSKVESLFENDERFKAVERDRDRRELFENHVEGLQKMERAKALEEHKRNIMEYRQFLESCDFIKANSQWRKLQDRLEADERCSRLEKIDRVDVFQEYIHDLEKEEEEQRKIQKEELRKAERKNRDEFRKLMEDHVAEGILTAKTHWRDYCMKVKDLPAYLAVASNTSGSTAKDLFEDAAEELEKQYHDDRTRIKDAVKLGKIMLLSTWTFDDFKHAITDEIGSPPVSDVNLRLVFDELLERVKEKEEKEAKKRKRLMDDFSDQLSSIKDINASSEWEDCKLLFENSQEYSSIGDENVCRHIFEKYVMQLKERAKEKEQAKLKEQKRKEEKARKEKERKEGEQSKVKQRKEKDERLEKDGSDNETADITESHVSKENKRSGKDSSRKHRKRHHNSEDCVDENENEQLKKSHGSSSDHKKSRRHLSASESDHDSRSRRHRRDHRHGSRRSGDHGELEDGEFGEGRRDS
Length1027
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.06
Grand average of hydropathy-1.035
Instability index56.64
Isoelectric point6.33
Molecular weight116590.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19366
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.58|      36|      38|     228|     263|       1
---------------------------------------------------------------------------
  228-  263 (72.58/39.06)	PNLNAEALSEWREHTSPDGRKYYYNRRTKLSSWEKP
  269-  304 (69.99/37.43)	PIERADASTNWKEFTSPDGKKYYYNKVTKESKWVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     106.77|      17|      18|      99|     115|       2
---------------------------------------------------------------------------
   61-   78 (24.83/12.77)	VP...PINVAMPPCPPQApQP
   82-   98 (21.08/ 9.54)	QP...MQQFPIRAGQLAQ.DM
   99-  115 (34.96/21.51)	LP...PQSIPLPVAHPNN.HP
  116-  133 (25.91/13.70)	LPvahPNSHPLPIAHPQ...P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.81|      21|      22|     971|     992|       3
---------------------------------------------------------------------------
  941-  957 (29.17/13.19)	GKDSSRKHRKRH....HNSED
  972-  992 (36.96/26.33)	GSSSDHKKSRRHLSASESDHD
  995- 1012 (23.68/11.85)	..SRRHRRDHRHGSRRSGDH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     116.97|      21|      21|     391|     411|       4
---------------------------------------------------------------------------
  353-  374 (20.24/ 8.04)	GITSSPVSVePVAAVGE..LQAVV
  375-  391 (18.28/ 6.52)	VSGS...SS.SPVADST..TRTG.
  392-  411 (28.20/14.26)	.ADGDHGSM.SVASTSD..TSTGI
  413-  435 (25.80/12.39)	GAVTEPMNN.SNSSTQDitTSVGV
  437-  455 (24.45/11.33)	AHDKEEASK.D..ATSE..KSNEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      87.38|      19|      21|     568|     586|       5
---------------------------------------------------------------------------
  558-  576 (22.04/10.93)	SSARWSKVESLFEND.ERFK
  577-  596 (21.49/10.44)	AVERDRDRRELFENHvEGLQ
  632-  644 (18.90/ 8.16)	KLQ...DR...LEAD.ERCS
  833-  851 (24.94/13.50)	ASSEWEDCKLLFENS.QEYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.91|      22|      22|     875|     896|       6
---------------------------------------------------------------------------
  666-  686 (18.68/ 6.94)	.EEEQRKIqKEELRKAERKNRD.
  875-  896 (35.97/20.82)	KEKEQAKL.KEQKRKEEKARKEK
  899-  920 (35.25/20.24)	KEGEQSKV.KQRKEKDERLEKDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.97|      29|      38|     151|     188|       7
---------------------------------------------------------------------------
  151-  187 (41.21/33.82)	PLSSshifapTNSQIQLSFIDstQYQSISQPHPAN....VS
  192-  224 (44.76/19.65)	PMLS......TESQRSASVTP..QQQTFEKSSMTNiidpVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.89|      69|     274|     458|     550|       9
---------------------------------------------------------------------------
  472-  550 (95.99/107.88)	KQEAKNAFMMLLesanvgSEWTWDRaMRVIITDKrYGA..LKTLGERkQAFNEFLsQRKKMDAEEKRSKQKKAREEFKKML
  755-  825 (110.90/64.38)	KDAVKLGKIMLL......STWTFDD.FKHAITDE.IGSppVSDVNLR.LVFDELL.ERVKEKEEKEAKKRKRLMDDFSDQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.75|      13|      18|      24|      36|      10
---------------------------------------------------------------------------
   24-   36 (28.99/18.07)	PQS..LPPMSFQ.FRP
   41-   56 (17.76/ 8.10)	PQSqqFIPVSSQhFQP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19366 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FIDSTQYQSISQPHPANVSSDGQPMLSTESQRSASVTPQQQTFEKSSMTNIIDPVSSTQPNLNAEALSEWR
2) GRGVPPINVAMPPCPPQAPQPFYSQPMQQF
3) MANNPQISGVQSLRPPIGGTMDPPQSLPPMSFQFRPAVPAPQSQQFIPVSSQHF
4) RAGQLAQDMLPPQSIPLPVAHPNNHPLPVAHPNSHPLPIAHPQPSIRAPINFAPSVAGPGTPLSSSHIF
5) RAKEKEQAKLKEQKRKEEKARKEKERKEGEQSKVKQRKEKDERLEKDGSDNETADITESHVSKENKRSGKDSSRKHRKRHHNSEDCVDENENEQLKKSHGSSSDHKKSRRHLSASESDHDSRSRRHRRDHRHGSRRSGDHGELEDGEFGEGRRDS
6) SLKEAQERMTCSAPDTASSPKVEPAPPADTSSKAQGITSSPVSVEPVAAVGELQAVVVSGSSSSPVADSTTRTGADGDHGSMSVASTSDTSTGIVGAVTEPMNNSNSSTQDITTSVGVSAHDKEEASKDATSEKSNEITPEDKAVDREPLVY
169
58
1
90
873
318
239
87
54
158
1027
469










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYNKV
287
295