<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19365

Description "Mediator complex, subunit Med25, von Willebrand factor type A"
SequenceMGVKFLAVVVDGTAATEPHWSNVVIHYLEKIIRCISNSSEDSGSEVELSLITYRRDGLHNKDSLPSPWTRSADSFVQRLWSVEFIGGGPSEANIAQALAEALHMLPKPYDKTHEKYRQHWFSAEKHCILVTASNPFVDKDYGRFTSLKSVAKKFAEYSVTLSVISPKRIPKFREIFNWANNISPEEAAFVNEKVNIYNLHGYLVLLSEKLPGAHSAINEEQMSILIMNACNSSPTCSSTDQDQDQETVTDNRSVPPNSETNNLSEEDVRLLKQMLDEDFSTDMDEDQNQENFVIMPGLYPLSYANGSTTTTKTSGLADVQSQNNKTRYETILEDLLGAEEGVSDNLRDQPKTAMSSTTAGPEYETLPTFGSESPMVTEEVAENNNVSFNGAPGNFDILQPADQLQMIQSINETSSQIMTTDSVVITSMSTTSYSYTTSQPAAGFQPTTYDGQFRNSSQSAMLTGGARPGGFLLGNPRLVQTTRASWVASSPNSASSVNYLRIPGAFSGGQGPSGLAGNWQPRLNPGGVENGSGSTRNVVGAFNHVFGESSEVRPVVPVMERPLRIHGGMGSIGPSNQKYEQDGYVLTWEGNFVAKYSRGIIHTGRVKAYKKSSAPQTLTADWPRTMKIAHVLYQHAFNRLPYQGQADIIVFEAQAEHSVYEHLKKSELCVIMDLPSQTLIFSPTERKLRFIGTLFRGHLPLFRSETYFGQLAVPRRPQQPRQEQNDHEAESKERIMDCLMRDEGDEDLGGSCNRQH
Length756
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.08
Grand average of hydropathy-0.505
Instability index48.33
Isoelectric point5.35
Molecular weight83724.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19365
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.27|      16|      42|     462|     478|       1
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  462-  478 (27.92/19.65)	LTGGARPGGfLLGN..PRL
  506-  523 (28.35/14.71)	FSGGQGPSG.LAGNwqPRL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.86|      20|      38|      64|      83|       2
---------------------------------------------------------------------------
   64-   83 (37.58/20.07)	LPSPWTRSADSFVQRLWSVE
  105-  124 (39.28/21.26)	LPKPYDKTHEKYRQHWFSAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.30|      22|      42|     240|     261|       3
---------------------------------------------------------------------------
  240-  261 (39.51/26.78)	DQDQDQETVTDNRSVPPNSETN
  284-  305 (40.79/27.91)	DEDQNQENFVIMPGLYPLSYAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.28|      24|      34|     525|     552|       4
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  525-  552 (37.02/30.59)	PGGVENGSGStrnvVGAFNHVFGESSEV
  562-  585 (45.27/27.26)	PLRIHGGMGS....IGPSNQKYEQDGYV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.38|      32|      42|     371|     405|       5
---------------------------------------------------------------------------
  371-  405 (50.43/35.30)	SESPMVTEEVAennNVSFNGAPGNFDILQPADQLQ
  414-  445 (53.95/30.38)	SSQIMTTDSVV...ITSMSTTSYSYTTSQPAAGFQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19365 with Med25 domain of Kingdom Viridiplantae
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