<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19356

Description Heat shock protein 70 family
SequenceMRMLSFLLLFLSQFLVGLEAADDSSAKLGTVIGIDLGTTYSCVGVYKSDHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAPLNPERTIFDVKRLIGRKFDDPEVQRDIKFLPYKVVNKEGKPYIQVKVKGETKVFSPEEISAMVLGKMKETAEQYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNRALGKLRKECERAKRALSNQHQVRVEIESLFDGIDFSEPLTRARFEELNMDLFKKTMGPVKKAMEDAGLKKTDIHEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEETKGMLLLDVTPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGRFDLSGIPPAPRGVPQIEVTFEVDANGILHVKAEDKAAKNSKYITITDVKGSLSQEEIERMVKEAEEFAEEDKKLREKIDARNKLETYVYNMKSTINDKDKLADKIDSDDKEKIESTLKETLEWLDDNQNAEKEDYDEKLKEVEAVCNPVIKQVYEKSSGSSSGSEDEESNAEL
Length655
PositionUnknown
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.07
Grand average of hydropathy-0.464
Instability index29.28
Isoelectric point5.19
Molecular weight72739.80
Publications









Function






Annotated function


GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19356
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.34|      17|      21|      60|      77|       1
---------------------------------------------------------------------------
   60-   77 (28.06/25.38)	NR..ITPSWVAFtDTERLIG
   82-  100 (26.28/17.85)	NQapLNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.86|      27|      27|     555|     581|       2
---------------------------------------------------------------------------
  536-  562 (41.16/25.01)	QEEIERMVKEAEEFAEEDKKLREKIDA
  563-  589 (43.70/26.97)	RNKLETYVYNMKSTINDKDKLADKIDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.55|      49|     168|     129|     187|       4
---------------------------------------------------------------------------
  135-  185 (77.67/68.02)	ETKVFSPEEISAMVLGkmKETAEQYLGKKI.KDAVI................TVPAYFNDAQRQATKD
  411-  476 (65.88/33.83)	ETKGMLLLDVTPLSLG..IETVGGVMTKLIpRNTVIptkksqvfttyqdqqtTVSIKVYEGERSLTKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.53|      21|     260|     106|     126|       6
---------------------------------------------------------------------------
  106-  126 (38.70/23.16)	PEVQRDIK.FLPYKVVNKEGKP
  368-  389 (34.83/20.20)	PKVQQLLKdFFDGKEPNKGVNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.09|      17|      26|     491|     510|       8
---------------------------------------------------------------------------
  491-  510 (24.35/23.48)	APRGVPQIEVTfevDANGIL
  518-  534 (27.74/17.17)	AAKNSKYITIT...DVKGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.42|      11|      19|     591|     601|      11
---------------------------------------------------------------------------
  591-  601 (17.70/10.58)	DKEKIESTLKE
  613-  623 (18.72/11.64)	EKEDYDEKLKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19356 with Med37 domain of Kingdom Viridiplantae
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