<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19346

Description WW domain containing protein
SequenceMTTPAPNLGSTPSWVPPGVSFTTAPGAPGTPTPGTPGPPGIVHSTQVSPNLTMPPGAADTSSAFLRPALLVAGPPVPSNLAMQPQMGVSYSSLPTVAAPPQGLWLQPPQMGGIPRLPTMPYPAAFPGPFPGMARGMPPFVPLPDSQSPGVTPVVNTGSVPMSSASSIQVAGSSGIRTELPASGDRSHVNDVGRTNQVTVGVNEQSDAWTAHKAETGVVYYYNALTGESTYDKPPDFKGEAEKVSVQPVPVSMVNLPGTDWVLVSTSDGKKYYYNNKTKVSCWQIPTEVTESRKKQDVDIPKEHSISVPSTNVLAEKGSSPVILNAPAINTGGRDAMALRPSNAQGSSSALDLIKKKLQEFGAPVTSSPGAVQSGLAASESNGSRAVDAIAKGQQSENSKDKLKDANGVGNVTDSSSDSEDADSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSTRRSLFEHYVKTRVEEERKEKRAAQKAAIESFKQLLEEASEDIDHKTDYQIFRKKWGDDPRFLALDRKDREHLLNERVLPLKRAAEEKARAIRAATTSSFKSMLREKGDITVNSRWSRVKDSLRDDPRYKSVKHEDREVLFNEYLSDLRAADEEAEKEAKAKREEQDKLRERERELHKRKEREEQEMERVRIKVRRKEAVVSFHALLVETIKDPQCLKRQPVPLTVLIPAQELKYTFTAGPKLDIHASWTESKPKLEKDPQARASNPDLDSSEMEKLFREHMKMLHERCAREFKALLAEVLTVDAAAQETDDGKTVLNSWSTAKRLLKPDPRYNKMPRKEREALWRRYTEDILWKQKSEKSELDPKEDKKVDSRSRSSADYGRLPSGLRGPHERR
Length864
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-0.738
Instability index52.86
Isoelectric point8.94
Molecular weight95701.97
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19346
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     396.68|      66|      66|     489|     554|       1
---------------------------------------------------------------------------
  384-  487 (37.81/19.18)	...RAvdaiAKGQQSENSKDKLKD.............................AngvgnvtdsssdSEDADSgptKEECIIqFKemlKergvapfsKWE.......KelpkivfDPRFKA....IPsystrRSLFEHYVKTRV...EEER
  489-  554 (113.39/73.01)	EK.RA....AQKAAIESFKQLLEE.............................A............SEDIDH...KTDYQI.FR...K........KWG.......D.......DPRFLA....LD.....RKDREHLLNERVLPLKRAA
  556-  620 (90.34/56.59)	EKaRA....IRAATTSSFKSMLRE..........................................KGDITV...NSRWSR.VK...D........SLR.......D.......DPRYKS....VK.....HEDREVLFNEYLSDL.RAA
  625-  659 (42.55/22.55)	EK.EA......KAKREEQDKLRER..........................................................................................E.RELH.....K.....RKEREEQEMERV.......
  661-  758 (67.99/40.67)	.I.KV....RRKEAVVSFHALLVEtikdpqclkrqpvpltvlipaqelkytftA............GPKLDI...HASWTE.SK...P........KLE.......K.......DPQARAsnpdLD.....SSEMEKLFREHMKMLHERC
  759-  813 (44.60/24.01)	AR.E.............FKALLAE......................vltvdaaA............QETDDG...KT.....VL...N........SWStakrllkP.......DPRYNK....MP.....RKEREAL............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     127.24|      21|      21|     107|     127|       2
---------------------------------------------------------------------------
   25-   41 (35.18/13.83)	PGAPGTPTPGT...PGP.P....GI
   74-   90 (23.14/ 6.73)	P...PVPSNLA..M.QP..QMGvSY
   91-  113 (33.66/12.94)	SSLPTVAAPPQglWLQP.PQMG.GI
  114-  136 (35.26/13.89)	PRLPTMPYPAA..FPGPfPGMArGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.12|      46|      50|     216|     262|       3
---------------------------------------------------------------------------
  216-  262 (72.78/46.88)	GVVYYYNAL.TG..ESTYDKPPDFKGEAE.....KVSVQPVPVSM.VNLPGTDwVL
  268-  313 (68.18/38.11)	GKKYYYNNK.TK..VSCWQIPTEVTESRK.....KQDVD.IPKEHsISVPSTN.VL
  320-  369 (41.16/19.80)	PVILNAPAInTGgrDAMALRPSNAQGSSSaldliKKKLQEFGAPV.TSSPG.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.45|      18|     124|      44|      61|       5
---------------------------------------------------------------------------
   44-   61 (32.38/19.06)	STQV..SPNL.TMPPGAADTS
  147-  162 (26.07/13.70)	SPGV..TP...VVNTGSVPMS
  166-  186 (18.99/ 7.68)	SIQVagSSGIrTELPASGDRS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19346 with Med35 domain of Kingdom Viridiplantae
Unable to open file!