<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19331

Description WW domain containing protein
SequenceMENSSQSSTAQPFRPPAVVSLGSQSFGSLSVQFRPMIPNQQGQPFLQSASQQFKPIGQGIPPNVGMPSGQSQPLHFSQPMQPYHARPGPAVHAMPSSQGLSMSYIQTRPIAPGPPQSQQPAPPFTNQMPGSAGMPFPSAYSFAPSSFLQPQNNANSLLQFQPMSQMQAPVAPIAGQPWLPSGSQSAPALTPVQQAAQQPSAPPSTDTAINSRTQQSSSDWQEHTSNDGRRYYYNKRTKQSVWDKPLELMTPMERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLARELAEKEASQGMQLDAGLTSHGSAAVASAETPPAVTSVASGTPSGPTGIALSPVAVTPVASLPNPSSVTIPGSSATPTSQSAVTSVVGIQPPAVTVASLNPAILGSTGVSSVLTNAITTPISTYENRATQDIVNSVDGASMQDIEEAKKGMAVAGKINVTPMEEKSLDEEPLVYASKLEAKNAFKSLLESANVQSDWTWEQAMREIINDKRYGALRTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEDSKELTSSTRWSKAVTMFENDERFKAVERARDKEDLFESYIVELERKEKEKAAEEHRQNVAEYRKFLESCDFIKVNSQWRKVQDRLEDDERYLLLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEHLRRVERKNRDEFRKLMEEHIDAGTLTARTHWRDYCLKVKDLPQYQAVASNTSGSTPKELFEDVIEELEKQYHEDKARVKDALKLGKVSIASTWTFDDFKAAILEDIVSPPVSDLNLKLVYEELLERAKEKEEKEAKKRQRLADDFTKLLYTFKEITSTSNWEDCKQLFEDSQEYRSIGEESLIREVFEEYITHLQEKAKEKERKREEEKARKEREREEKEKRKEKERKEKDREREKEKGKERSKKDDTDSENIDITDSHGHKEDKKREKDRDRKHRKRHQSVTDDMGSDKDEKEESKKRKHSSDRKKSRKHAYSPESDSENRHKKHRREHRDSRRNGHDELEDGELGEDGEIP
Length1026
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-1.043
Instability index55.47
Isoelectric point6.40
Molecular weight116797.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19331
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     501.85|      65|      66|     542|     606|       1
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  476-  534 (68.96/43.00)	.FKSLLE....SANVQSDWTWE....QA..MRE....iiNDKRYGAL.....RTLGERKQAFNEY...LGQR.KK..LEAE.ERRM
  542-  606 (107.45/71.83)	EFTKMLE...DSKELTSSTRWS....KAVTMFE......NDERFKAV.....ERARDKEDLFESYIVELERKEKE..KAAE.EHRQ
  610-  675 (84.01/54.27)	EYRKFLE...SCDFIKVNSQWR....KVQDRLE......DDERYLLL.....EKL.DRLLIFQDYIRDLEKEEEEqkKIQK.EHLR
  684-  750 (66.79/41.37)	EFRKLMEehiDAGTLTARTHWR....DYCLKVK......DLPQYQAV..asnTSGSTPKELFEDVIEELEKQYHE..DKAR.....
  755-  812 (27.59/12.01)	.....LK...LGKVSIAST.WTfddfKAAILEDivsppvSDLNLKLVyeellERAKEKE........EKEAK...........KRQ
  817-  874 (72.14/45.38)	DFTKLLY...TFKEITSTSNWE....DCKQLFE......DSQEYRSI.....GEESLIREVFEEYITHLQEKAKE..K........
  875-  901 (21.24/ 7.26)	.........................................ERKREE.....EKAR..........KEREREEKE..KRKE.KERK
  902-  950 (53.68/31.56)	EKDRERE...KEK..........................GKERSKKD.....DTDSENIDITDSHGHK.EDKKRE..KDRDrKHRK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.58|      19|      19|     321|     339|       2
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  183-  202 (20.18/ 6.24)	SQSAPALTPVqqAA.QQPSAP.
  321-  339 (36.03/16.04)	AETPPAVTSV..AS.GTPSGPT
  342-  361 (27.37/10.68)	ALSPVAVTPV..ASlPNPSSVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.99|      39|      39|     217|     255|       3
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  217-  255 (79.07/57.61)	SSDWQEHTSNDGRRYYYNKRTKQSVWDKPLELMTPMERA
  258-  296 (74.92/54.14)	STVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLARELA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     164.02|      19|      19|      26|      44|       4
---------------------------------------------------------------------------
   26-   44 (37.66/24.05)	FG.SLS.VQF...RPMIPNQ......QGQP
   46-   61 (27.07/14.89)	LQ.SAS.QQF...KPI...G......QGIP
   64-   82 (32.02/19.17)	VG.MPS.GQS...QPLHFSQ......PMQP
   98-  115 (21.84/10.37)	QGlSMSyIQT...RPIAP.........GPP
  129-  150 (25.98/13.95)	PG.SAG.MPFpsaYSFAPSS......FLQP
  155-  177 (19.46/ 8.31)	.N.SL..LQF...QPMSQMQapvapiAGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.87|      24|      24|     970|     993|       5
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  970-  993 (40.52/25.01)	KKRKHSSDRKKSRKHAYSPESDSE
  995- 1018 (42.34/26.50)	RHKKHRREHRDSRRNGHDELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.60|      30|      48|     372|     401|       7
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  372-  401 (48.91/34.10)	QSAVTSVVGIQPPAVTVASLNPAILGSTGV
  406-  420 (16.60/ 6.49)	TNAITT......PISTYE..NRA.......
  422-  451 (46.09/31.70)	QDIVNSVDGASMQDIEEAKKGMAVAGKINV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19331 with Med35 domain of Kingdom Viridiplantae
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