<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19331

Description WW domain containing protein
SequenceMENSSQSSTAQPFRPPAVVSLGSQSFGSLSVQFRPMIPNQQGQPFLQSASQQFKPIGQGIPPNVGMPSGQSQPLHFSQPMQPYHARPGPAVHAMPSSQGLSMSYIQTRPIAPGPPQSQQPAPPFTNQMPGSAGMPFPSAYSFAPSSFLQPQNNANSLLQFQPMSQMQAPVAPIAGQPWLPSGSQSAPALTPVQQAAQQPSAPPSTDTAINSRTQQSSSDWQEHTSNDGRRYYYNKRTKQSVWDKPLELMTPMERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLARELAEKEASQGMQLDAGLTSHGSAAVASAETPPAVTSVASGTPSGPTGIALSPVAVTPVASLPNPSSVTIPGSSATPTSQSAVTSVVGIQPPAVTVASLNPAILGSTGVSSVLTNAITTPISTYENRATQDIVNSVDGASMQDIEEAKKGMAVAGKINVTPMEEKSLDEEPLVYASKLEAKNAFKSLLESANVQSDWTWEQAMREIINDKRYGALRTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEDSKELTSSTRWSKAVTMFENDERFKAVERARDKEDLFESYIVELERKEKEKAAEEHRQNVAEYRKFLESCDFIKVNSQWRKVQDRLEDDERYLLLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEHLRRVERKNRDEFRKLMEEHIDAGTLTARTHWRDYCLKVKDLPQYQAVASNTSGSTPKELFEDVIEELEKQYHEDKARVKDALKLGKVSIASTWTFDDFKAAILEDIVSPPVSDLNLKLVYEELLERAKEKEEKEAKKRQRLADDFTKLLYTFKEITSTSNWEDCKQLFEDSQEYRSIGEESLIREVFEEYITHLQEKAKEKERKREEEKARKEREREEKEKRKEKERKEKDREREKEKGKERSKKDDTDSENIDITDSHGHKEDKKREKDRDRKHRKRHQSVTDDMGSDKDEKEESKKRKHSSDRKKSRKHAYSPESDSENRHKKHRREHRDSRRNGHDELEDGELGEDGEIP
Length1026
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-1.043
Instability index55.47
Isoelectric point6.40
Molecular weight116797.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19331
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     501.85|      65|      66|     542|     606|       1
---------------------------------------------------------------------------
  476-  534 (68.96/43.00)	.FKSLLE....SANVQSDWTWE....QA..MRE....iiNDKRYGAL.....RTLGERKQAFNEY...LGQR.KK..LEAE.ERRM
  542-  606 (107.45/71.83)	EFTKMLE...DSKELTSSTRWS....KAVTMFE......NDERFKAV.....ERARDKEDLFESYIVELERKEKE..KAAE.EHRQ
  610-  675 (84.01/54.27)	EYRKFLE...SCDFIKVNSQWR....KVQDRLE......DDERYLLL.....EKL.DRLLIFQDYIRDLEKEEEEqkKIQK.EHLR
  684-  750 (66.79/41.37)	EFRKLMEehiDAGTLTARTHWR....DYCLKVK......DLPQYQAV..asnTSGSTPKELFEDVIEELEKQYHE..DKAR.....
  755-  812 (27.59/12.01)	.....LK...LGKVSIAST.WTfddfKAAILEDivsppvSDLNLKLVyeellERAKEKE........EKEAK...........KRQ
  817-  874 (72.14/45.38)	DFTKLLY...TFKEITSTSNWE....DCKQLFE......DSQEYRSI.....GEESLIREVFEEYITHLQEKAKE..K........
  875-  901 (21.24/ 7.26)	.........................................ERKREE.....EKAR..........KEREREEKE..KRKE.KERK
  902-  950 (53.68/31.56)	EKDRERE...KEK..........................GKERSKKD.....DTDSENIDITDSHGHK.EDKKRE..KDRDrKHRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.58|      19|      19|     321|     339|       2
---------------------------------------------------------------------------
  183-  202 (20.18/ 6.24)	SQSAPALTPVqqAA.QQPSAP.
  321-  339 (36.03/16.04)	AETPPAVTSV..AS.GTPSGPT
  342-  361 (27.37/10.68)	ALSPVAVTPV..ASlPNPSSVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.99|      39|      39|     217|     255|       3
---------------------------------------------------------------------------
  217-  255 (79.07/57.61)	SSDWQEHTSNDGRRYYYNKRTKQSVWDKPLELMTPMERA
  258-  296 (74.92/54.14)	STVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLARELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     164.02|      19|      19|      26|      44|       4
---------------------------------------------------------------------------
   26-   44 (37.66/24.05)	FG.SLS.VQF...RPMIPNQ......QGQP
   46-   61 (27.07/14.89)	LQ.SAS.QQF...KPI...G......QGIP
   64-   82 (32.02/19.17)	VG.MPS.GQS...QPLHFSQ......PMQP
   98-  115 (21.84/10.37)	QGlSMSyIQT...RPIAP.........GPP
  129-  150 (25.98/13.95)	PG.SAG.MPFpsaYSFAPSS......FLQP
  155-  177 (19.46/ 8.31)	.N.SL..LQF...QPMSQMQapvapiAGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.87|      24|      24|     970|     993|       5
---------------------------------------------------------------------------
  970-  993 (40.52/25.01)	KKRKHSSDRKKSRKHAYSPESDSE
  995- 1018 (42.34/26.50)	RHKKHRREHRDSRRNGHDELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.60|      30|      48|     372|     401|       7
---------------------------------------------------------------------------
  372-  401 (48.91/34.10)	QSAVTSVVGIQPPAVTVASLNPAILGSTGV
  406-  420 (16.60/ 6.49)	TNAITT......PISTYE..NRA.......
  422-  451 (46.09/31.70)	QDIVNSVDGASMQDIEEAKKGMAVAGKINV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19331 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPEELKLARELAEKEASQGMQLDAGLTSHGSAAVASAETPPAVTSVASGTPS
2) KAKEKERKREEEKARKEREREEKEKRKEKERKEKDREREKEKGKERSKKDDTDSENIDITDSHGHKEDKKREKDRDRKHRKRHQSVTDDMGSDKDEKEESKKRKHSSDRKKSRKHAYSPESDSENRHKKHRREHRDSRRNGHDELEDGELGEDGEIP
3) LSVQFRPMIPNQQGQPFLQSASQQFKPIGQGIPPNVGMPSGQSQPLHFSQPMQPYHARPGPAVHAMPSSQG
4) QNNANSLLQFQPMSQMQAPVAPIAGQPWLPSGSQSAPALTPVQQAAQQPSAPPSTDTAINSRTQQSSSDWQEHTSNDGRRYYYN
5) SMSYIQTRPIAPGPPQSQQPAPPFTNQMPGSAGMPFPSAYSFAPSSFL
285
870
29
151
101
336
1026
99
234
148










Molecular Recognition Features






MoRF SequenceStartStop




1) DELEDGELGED
2) GRKYYYN
3) RHKKH
4) RKKSRKHAYS
1012
269
995
978
1022
275
999
987