<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19329

Description Uncharacterized protein
SequenceMDQNQRPSSASRAYQFHPGRAATIINLFDLYLGRGSRQKPDDSTREPPNKTQKRVVALNRELPPRNEQFLSDFEQIQSQFSDQEQLRAVTESVLISLVVQCSSHVPRAEFLLFALRSLCSIGYINWDSFLPSLLSSVSTAEMSAGQGTQAIAAVSSQPGVLPSSNTISNSSNFHSSNPASPLPSVHGIGSPAQSALEPAPCATLSPVKSSDITCMVQQSTRVNSSIRDNAISSLRQLCCKIILAGLDFNLKPVTHADIFSHMLNWLVNWDQRQQGSDEFDGLKSWKPGKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRGGLQFIENIPDDEALFTLILEIHRRRDMMATHMQMLDQHLHCPTFGTQRIFSQITPNVAGEAVSGLRYSPITYPSVLGEPLHGEELATSIQKGSLDWERALRCIRHAFCTTPSPDWWKRVLLVAPCYRLQDQGSTPGAVFSSEMICEGTIDRMEKRIKEINCWQEWRVFSDIFYFLMKSGCIDFVHFVDKLVLRLTEGGDHHILRTNHVTLLIAEIIRIELVINALNTDARKVETTRKILSFHREDRSSDPNSPQGILLDFISSCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRQASKGDRMMDYMKMDDRSIGMFWVVSYTMAQPACETVMNWLSSAGVTELLPGSNLQASDSLMVMREVSPLPMSLLSGFSMNMCLKLAYQMEESLFSGQNLAQRNPSVLSKPGVTLLLLEILNYRLLPLYSEIASVLGCAPSGLGIGQDVFIAAVGLSNKHWRCDHTEEPLVLVFPREPRYGVELDSLVSLAKATPSLTTGCVGVRRSHTDLILHKGLESCEQSKKVDCEHAASLGSQIEITQPEGLSLRMNHESRGLSQPLEIGCSQWSSQAFERTGIKQEYGLCTAGFNSGEGLSAYCDIGLRHQGLRHKELGPNDFGHKVESLGVGVPRQVYCAGAIYPPETLLGFYYLQRPKAGFHGKGKATFLGDGVLHEDEGWGAIGLGIWVSNNRCIVDLKTDVLRVGIWGCAWGCGSMLGPFSIFGSEPISDCLFC
Length1050
PositionTail
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.08
Grand average of hydropathy-0.160
Instability index48.56
Isoelectric point6.01
Molecular weight116918.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19329
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.79|      13|      23|     257|     269|       1
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  257-  269 (27.53/18.08)	DIFSHMLNW.....LVNW
  277-  294 (20.26/11.25)	DEFDGLKSWkpgkaLIEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.58|      58|      64|     605|     667|       2
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  605-  667 (96.73/67.90)	QLQKGKQIdEWWRQASKgdrmMDYMKMDDRSIGMFWVVSYTM......AQPACETVMNWLSSAGVTELL
  671-  734 (92.84/52.42)	NLQASDSL.MVMREVSP....LPMSLLSGFSMNMCLKLAYQMeeslfsGQNLAQRNPSVLSKPGVTLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.41|      71|     392|     113|     188|       3
---------------------------------------------------------------------------
  113-  188 (114.20/79.41)	FALRSLCsIGYINW.DSFLPSLLSSVSTAEMSAGQGTQAIAAVSSQPGVLPSSNT....ISNSS...NFH....SSNPASPlpsvHGI
  495-  577 (102.20/59.31)	FLMKSGC.IDFVHFvDKLVLRLTEGGDHHILRTNHVTLLIAEIIRIELVINALNTdarkVETTRkilSFHredrSSDPNSP....QGI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.58|      34|      35|     842|     875|       5
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  842-  875 (58.02/33.95)	KVDCEHAASLG.SQIEITQPEGLSLRMNHESRGLS
  879-  913 (56.56/32.91)	EIGCSQWSSQAfERTGIKQEYGLCTAGFNSGEGLS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19329 with Med23 domain of Kingdom Viridiplantae
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