<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19327

Description "Mediator complex, subunit Med"
SequenceMNRGPPEHWLYTGIFKRIDLQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAIDPVERILVMYSPFLAYHPLRFSFVRDTLAYFYGHLPGKLIVRILNILDIKKIPFSDSFPQHISSTNPVMCPPLDYFATLLSGLVNNVIPPLHNNSKSGSLCEALSNLLRKNSATSQSGQTNASDNQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQVVVNIQATLIQSSHGLHGASNGVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSNMVSRSGYSCQQLSCLMIQACGLLLAQLPPDFHIQLYIEASRIIKETWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGTHIIIKHLRPVTSVAMLRIAFRIMGPLLPRLANAHALFSKTLSLLLNTMLDVFGKNSQTSSSVEASEITDLIDFLHHVVHYEGQGGPVQSSSKPRPEVLALFGKVSESLRPDVQHLLSHLKPETNCSIYAATHPKLAPNSSQNSLT
Length534
PositionTail
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.07
Grand average of hydropathy0.041
Instability index45.33
Isoelectric point7.03
Molecular weight58445.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19327
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.73|      35|      98|      91|     126|       2
---------------------------------------------------------------------------
   51-   99 (40.39/23.33)	LIVyRLIenDAIDpVERIlvmysPFLAYHPLRFSF....vrdtlAYFYGHLPG
  101-  144 (54.34/29.06)	LIV.RIL..NILD.IKKI.....PFSDSFPQHISStnpvmcpplDYFATLLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.94|      14|     268|     157|     173|       7
---------------------------------------------------------------------------
  157-  170 (24.58/17.99)	SKSGSLCEALSNLL
  288-  301 (28.36/12.43)	SRSGYSCQQLSCLM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19327 with Med23 domain of Kingdom Viridiplantae
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