<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19316

Description Mediator of RNA polymerase II transcription subunit
SequenceMAVSVQKPATSHLWDTVLEITKSAQDRNSDPLLWAIQLSSNLNSAGVSLPSVDLAHLLVSHICWANHVPITWKFLEKALTVKIAPPMLVLALLSTRVIPNRQLHPTAYRLYMELLKRHSFSFTSQTNVLNQKIMKSIDEVLHLSELFGLDVSEPGLLLVEFVFSIVWQLLDASLDDEGLLELTPEKKSRWPTRPQDMEIDGQDCFSEKRSDNEVLHKANTAMAIEIIVEFLKNKVTSRLLYLARRNMPSHWGCLIQQLQLLAANSSVLRSLKHITPEVFMQLTSDTRRLLTRECKTISQHDFHAVLASGNTLSPARQSHGASSSSIWLPFDLFLEDAMDGSQVAATSAVDTLIGLVKALQAVNSAAWHNTFLGLWISALRLIQRERDPREGPVPRLDTCLCMLLSISTLAITNIIEEEESELMEETEQSSTNQRIDKQALGQRRKDLVISLQLLGDYEGLLTPPQCVSSAANQAAAKAMMFISGLTVSNGYYESSTVNDVPINCIGNMRHLIVEACIARNLLDTTAYFWPGYVHACSNQLSRNIPSQVTGWSSLMKGSPLTPALVNALIATPASSLAEIEKIYEIAINGSDDEKISAANILCGASLVRGWSIQENACLFIIGLLSPPVPVDYSGSESHLIRYAPLFNVLLVGISSIDCVQIFSLHGLVPLLAGALMPICEVFGSSVPNSWTLPTGEELSCHAIFSNAFTLLLRSWRFDHPPLEHMMGDVRPTVGSELSPEYLLVVRNSRLASVGTSAKDRIKSRRVSKFITFSTEPILMDSFPKLKLWYQQHQKCICSTLSGLVPGTPVHQIVDALLNMMFRKIGRGNQPLTPTTSGSSTSSVSGTDESSIRLKVPAWNILEATPFVLDAALTACAHGRLFPRELATGLKDLADYLPATLATIVSYFSAEVTRGIWKPAHMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLSVGGSSPATIPLPLAALISLTITFKLDKASERALQLIGPALNSLATGCPWPCMPIIASLWAQKVKRWGDFLVFSASQAVFHHNSDAVVQLLKSCFTSTLGLSSSHIHSNGGVGSLLGHGFGSFSAGISPVAPGFLYLRVHRSVRDVVFLTEEILSLLMLSVKEIASCGLPKEKVEKLKRTKYGLRYGHVSMATAMARIKLAASLGASLVWLTGRSSLVQCLIKETLPSWFISAHGSEQEGQESGVTVSVLGGYALAYFAVLSGTFAWGVDPETPTSNRRSKILGAHLDFLASALDGKISLGCDSATWRAYVSGLVSLLVGCTQNWMMEIDVDILKRLSKGLRQWDEEELALAVLGLGGVGAMGAAAELVIESDF
Length1328
PositionTail
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.07
Grand average of hydropathy0.164
Instability index45.57
Isoelectric point6.40
Molecular weight144634.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19316
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     245.58|      75|     273|     943|    1023|       1
---------------------------------------------------------------------------
  831-  891 (89.54/49.16)	LTPTTSGSSTSSVSGTDESSIRLKVPAWNILEATpFVLDAAlTACAHGRLFP..RELATG.....................LKD
  944- 1020 (120.85/71.51)	LAATGVDVPSLSVGGSSPATIPLPLAALISLTIT.FKLDKA.SERALQLIGPaLNSLATGCP..WpCMPI...IASLWAQKVKR
 1257- 1297 (35.19/14.63)	......................................DSA.TWRA.YVSG..LVSLLVGCTqnW.MMEIdvdILKRLSKGLRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.32|      21|      21|     259|     279|       2
---------------------------------------------------------------------------
  259-  279 (34.11/24.21)	QLLAANSSVL.RSLKHITPEVF
  281-  302 (32.21/22.42)	QLTSDTRRLLtRECKTISQHDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     212.93|      67|     246|     306|     374|       3
---------------------------------------------------------------------------
  306-  374 (108.61/76.67)	LASGNTLSPA.RQSHGASSSSIWLPFDLFLEDAMDGSQVAATSAVDTLIG..LVKALQAVNSAAWHntFLGL
  554-  623 (104.32/67.46)	LMKGSPLTPAlVNALIATPASSLAEIEKIYEIAINGSDDEKISAANILCGasLVRGWSIQENACLF..IIGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.55|      39|     250|     790|     830|       4
---------------------------------------------------------------------------
  790-  830 (65.50/40.24)	QQHQKCICSTLsGLvPGTPVHQI..VDALLNMMFRKIGRGNQP
 1043- 1083 (65.05/32.79)	QLLKSCFTSTL.GL.SSSHIHSNggVGSLLGHGFGSFSAGISP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.82|      24|     101|      40|      64|       5
---------------------------------------------------------------------------
   40-   64 (38.46/25.78)	SNLNSAGVSLPSVDLAHLLVShICW
  144-  167 (42.36/23.61)	SELFGLDVSEPGLLLVEFVFS.IVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.24|      30|      32|    1187|    1217|       6
---------------------------------------------------------------------------
 1187- 1217 (47.03/35.51)	AHGSEQEGQESGVTVSVLGGYaLAYFA.VLSG
 1220- 1250 (49.21/32.46)	AWGVDPETPTSNRRSKILGAH.LDFLAsALDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.55|      23|     104|     626|     660|       7
---------------------------------------------------------------------------
  500-  522 (42.40/18.89)	VPINCIGNMRHLIVEACIARNLL
  628-  650 (41.15/35.95)	VPVDYSGSESHLIRYAPLFNVLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19316 with Med33 domain of Kingdom Viridiplantae
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