<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19312

Description ATP-dependent DNA helicase
SequenceMEDEEILFEELLNVEVEIQDVEEQIKALLEKQESLYHRQSELRTLLEAAKGSGDRVNDGVPTAVENWSGSFEWDSQADDVRFNVFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPALLRNGVALVVSPLLSLIQDQVMGLAALGISANMLTSTTSKDEEKFVYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKIQFPNVPVIALTATATQKVQNDLMEMLHIPKCVKFVSTVNRPNLFYTVREKSSVGKVVNDEIAKFIQEFYLNNESGIVYCFSRKECEQVAKELCARGISADYYHADMDVNAREKVHTRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSQCLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQTRRQCRRSSIFRHFAEPLQDCNGMCDNCAFSSEDKEVDVSRHAKLMVSLLQDTQENDQRLTMLQLVDKMKTKHKEVGTDLKKEEMEQLVIQLILVHVLKEEFQHTAYATNAYVTLGPLARQVLQGKRNVTLEICSEQKKVDHMKSVKHNLQYSGLELKLDELRKELSSIHGGIFPHSILSRQQICILSDRKPNSLEQLEKIIGKLKTEKYGTRILEQINKYSDLDEMKEQGNEERATKRLKTKKALVVIESSDEDE
Length703
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.07
Grand average of hydropathy-0.414
Instability index42.20
Isoelectric point6.48
Molecular weight80042.76
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19312
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.95|      18|      32|     436|     467|       1
---------------------------------------------------------------------------
  311-  328 (34.73/14.79)	LNNESGIV.YCFSRKECEQ
  436-  454 (31.22/47.19)	LQNLYDIVrYCQTRRQCRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.73|      26|      32|     643|     673|       2
---------------------------------------------------------------------------
  643-  673 (33.30/29.06)	EQ..LEKIIGKLKTEKyGTRILEQinkySDLDE
  676-  703 (37.43/18.57)	EQgnEERATKRLKTKK.ALVVIES....SDEDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.23|      12|      30|     348|     361|       9
---------------------------------------------------------------------------
  348-  361 (18.28/19.06)	DVnaREKVHTRWSK
  381-  392 (21.96/14.60)	DV..RFVIHHSLSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.01|      26|      30|     501|     526|      10
---------------------------------------------------------------------------
  501-  526 (43.56/24.69)	QENDQRLTMLQLVDKMKT..KHKEVGTD
  530-  557 (37.44/20.41)	EEMEQLVIQLILVHVLKEefQHTAYATN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.07|      12|      35|     258|     274|      12
---------------------------------------------------------------------------
  258-  274 (17.42/25.40)	KVQNDlmemlHIPKCVK
  296-  307 (20.65/13.37)	KVVND.....EIAKFIQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19312 with Med34 domain of Kingdom Viridiplantae
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