<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19309

Description Mediator of RNA polymerase II transcription subunit 9
SequenceMELPYGGGSGGGGSWTMIPNVQTHSSVSTPSNQDSLYLHQQQFQPQQQFQPQQSPLYQQQQRLLLHQQPQQQQQQPQQQHHHQSLASHFRLFHLVEKLGEAIENGNRDQQSDALINDLNNHFDKCRQLLNSISGSLSTKAMTVEGQKRKLEESEQMLNQRRDLINKYIKSVEELVKSEP
Length179
PositionMiddle
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-1.052
Instability index66.80
Isoelectric point6.49
Molecular weight20577.55
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364145

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19309
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.60|      22|      24|      30|      53|       1
---------------------------------------------------------------------------
   30-   53 (36.96/21.64)	P..SNQDSLYLHQQQfQPQQQfQPQQ
   55-   78 (40.64/16.02)	PlyQQQQRLLLHQQP.QQQQQ.QPQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.12|      10|      26|     121|     130|       2
---------------------------------------------------------------------------
  121-  130 (18.84/13.40)	HFDKCRQLLN
  149-  158 (16.27/10.67)	KLEESEQMLN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19309 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MELPYGGGSGGGGSWTMIPNVQTHSSVSTPSNQDSLYLHQQQFQP
2) QQFQPQQSPLYQQQQRLLLHQQPQQQQQQPQQQHHHQSLA
1
47
45
86










Molecular Recognition Features






MoRF SequenceStartStop




1) MELPYG
1
6