<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19300

Description Mediator of RNA polymerase II transcription subunit
SequenceMDPDIKKFGRGPRELTGSVDLISQYKLLDPHAYFCKRSLPLSIADTHYLHNAVGDTEIRKGEGMQLDQLIQNTSYSRDTNVCIQPFDLDILQEAFQLRETGPVELPASEKGTPTIAGKSKTESKDKERKHKKHKDRDKDKDKEHKKNKHRHKDRSKDKDKEKKKEKSGHHDSGADHSKKHHEKKRKHDGDEDINDIHRHKKSKHKSSKIDEVGAIKVAG
Length219
PositionHead
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.04
Grand average of hydropathy-1.463
Instability index32.81
Isoelectric point9.40
Molecular weight25155.95
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19300
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      97.36|      15|      15|     132|     146|       1
---------------------------------------------------------------------------
  132-  146 (30.16/12.46)	K..HKDRDKDKDKEHKK
  148-  164 (22.58/ 7.49)	KhrHKDRSKDKDKEKKK
  166-  182 (20.46/ 6.10)	KsgHHDSGADHSKKHHE
  186-  199 (24.16/ 8.53)	K..H.DGDEDINDIHRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.54|      29|      45|      35|      63|       2
---------------------------------------------------------------------------
   35-   63 (51.14/33.10)	CKRSLPLSIADTHYLHNAVGDTEIRKGE.G
   82-  111 (44.40/27.92)	CIQPFDLDILQEAFQLRETGPVELPASEkG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19300 with Med19 domain of Kingdom Viridiplantae
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