<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19297

Description WW domain containing protein
SequenceMANNPQISGVQSLRPPIGGTMDPPQSLPPMSFQQFPIRAGQLAQDMLPPQSIQLPVAHPNNHPLPVAHPNSHPLPVAHPQPSVRAPINFTPGVAGPGTPLSSSHIFAPTNSQIQLSFIDSTQYQSISQPHPANVSSDGQPMLSTESQRSASVTPQQQTFERPSMINIIAPVSGTQPILNAEALSEWREHMSPDGRKYYYNRRTKLSSWEKPIDLMTPIERADASTNWKEFTSPDGKKYYYNKVTKESKWVIPEELKLAREQLAKASLKEAQERMTCSAPDTASSPKVEPAPPADTSSKAQGITSSPVSVEPVAAVGELQAVVVSGSSSSPVADSTTRTGADGDHGFMSVASTSDTLTGIGAVTEPMNNSNSSTHDITTSIGVSAHDKEEASKDATSEKSNEIAPEDKAVDREPLVYANKQEAKNAFMMLLESANVGSEWTWDRAMRVIITDKRYGALKTLGERKQAFNEFLSQRKKLDAEEKRNKQKKAREEFKKMLEESAELTSSTRWSKAESLFENDERFKAVERDRDRRELFENHVEGLQKMERAKALEEHKRNITEYRQFLESCDFIKANSQWRKLQDRLEADERCSRLEKIDRVDVFQEYIHDLEKEEEEQRKIKKEELRKTERKNRDEFRKLMEDHVAEGTLTAKTHWRDYCMKASIHWLVKDLPAYLAVASNTSGSTAKDLFEDAAEELEKQYHDDRTRIKDAVKLGKIMLLSTWTFDDFKHAITDDIGSPPLSDVNLRVCVLRLFAISDAMQLHPAIVKIPGTIESMMDSYSFLLVFDELLERVKEKEEKEAKKRKRLMDDFSDQLSSIKDITASSEWEDCKLLFETSQEYSSIGDENVCRHIFEKYVMQLKERAKEREQAKLKEQKRKEEKARKEKERKEGEQSKVKQRKEKDERLEKDGSDNDTADITESHVSKENRRSGKDSSRKHRKRHHNSEDCVDENENGQLKKSHGSSSDHKKSRRHISASESDNDSRSRRHRRDHRRGSRRSGDHGELEDGEFGEGRRDS
Length1016
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-0.977
Instability index53.60
Isoelectric point6.39
Molecular weight115498.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19297
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     137.89|      17|      18|      44|      60|       1
---------------------------------------------------------------------------
   11-   29 (24.25/12.31)	QSL.RPPI..GGTM....dpPQSLP...P
   30-   49 (19.98/ 8.83)	MSFqQFPIraGQLA......QDMLP...P
   50-   69 (28.13/15.48)	QSI.QLPV..AHPN......NHPLPvahP
   70-   86 (28.21/15.55)	NSH.PLPV..AHPQ......PSVRA...P
   87-  108 (19.10/ 8.11)	INF.TPGV..AGPG.tplssSHIFA...P
  124-  144 (18.22/ 7.39)	QSI.SQP....HPAnvssdgQPMLS...T
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     111.30|      22|      22|     858|     879|       2
---------------------------------------------------------------------------
  787-  805 (20.52/ 7.25)	.......................ELLE.....RVKEKEEKEA......KKRKR
  808-  836 (19.04/ 6.19)	DDfsD..................QLSSikditASSEWEDCKL......LFETS
  837-  876 (23.90/ 9.67)	QE..YssigdenvcrhifekyvmQLKE.....RAKEREQAKL......KEQKR
  877-  900 (25.72/10.97)	KE..E...............karKEKE.....R.KEGEQSKV......KQRKE
  901-  928 (22.13/ 8.40)	KD..E..................RLEK.....DGSDNDTADIteshvsKENRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.01|      39|      40|     176|     214|       3
---------------------------------------------------------------------------
  165-  211 (70.51/44.47)	INIiapvsgtqPILNAEALSEWREHMSPDGRKYYYNRRTKLSSWEKP
  212-  252 (71.50/45.20)	IDL......mtPIERADASTNWKEFTSPDGKKYYYNKVTKESKWVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.35|      15|     102|     527|     541|       4
---------------------------------------------------------------------------
  527-  541 (28.15/17.04)	RDRDR.RELFENHV.EG
  617-  629 (17.50/ 7.67)	RKIKK.EEL..RKT.ER
  630-  646 (16.70/ 6.96)	KNRDEfRKLMEDHVaEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.36|      15|      23|     275|     289|       5
---------------------------------------------------------------------------
  286-  306 (17.00/ 7.60)	KVEP...appadTSSkAQGITSSP
  308-  330 (17.36/ 7.93)	SVEPvaavgelqAVV.VSGSSSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.12|      20|      23|     952|     971|       6
---------------------------------------------------------------------------
  933-  963 (23.10/ 9.52)	SSRKH.RKRhhnsedcvdenENGQLKKSHGSS
  964-  988 (27.86/13.02)	SDHKK.SRR......hisasESDNDSRSRRHR
  989- 1016 (23.16/ 9.57)	RDHRRgSRR....sgdhgelEDGEFGEGRRDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.33|      63|      65|     392|     456|       7
---------------------------------------------------------------------------
  392-  456 (104.64/75.09)	KDATSEKS...NEIAPEDKAVDREPlvYANKQ.EAKNAFM.MLLESANVGSEWTWDRAMRVIITDKRYGA
  457-  524 (89.69/58.27)	LKTLGERKqafNEFLSQRKKLDAEE..KRNKQkKAREEFKkMLEESAELTSSTRWSKAESLFENDERFKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.00|      14|      20|     347|     360|       8
---------------------------------------------------------------------------
  347-  360 (25.69/18.19)	M..SVASTSDTLTGIG
  366-  381 (20.30/12.70)	MnnSNSSTHDITTSIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.20|      10|      21|     730|     739|       9
---------------------------------------------------------------------------
  730-  739 (18.68/12.35)	AITDDIGSPP
  754-  763 (18.52/12.18)	AISDAMQLHP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19297 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAVGELQAVVVSGSSSSPVADSTTRTGADGDHGFMSVASTSDTLTGIGAVTEPMNNSNSSTHDITTSIGVSAHDKEEASKDATSEKSNEIAPEDKAVDREPLVY
2) AKEREQAKLKEQKRKEEKARKEKERKEGEQSKVKQRKEKDERLEKDGSDNDTADITESHVSKENRRSGKDSSRKHRKRHHNSEDCVDENENGQLKKSHGSSSDHKKSRRHISASESDNDSRSRRHRRDHRRGSRRSGDHGELEDGEFGEGRRDS
3) MANNPQISGVQSLRPPIGGTMDPPQSLPPMSFQQFPIRAGQLAQDMLPPQSIQLPVAHPNNHPLPVAHPNSHPLPVAHPQPSVRAPINFTPGVAGPGTPLSSSHIF
4) QSISQPHPANVSSDGQPMLSTESQRSASVTPQQQTFERPSMIN
5) SLKEAQERMTCSAPDTASSPKVEPAPPADTSSKAQGITSSPVSVEP
313
863
1
124
266
416
1016
106
166
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA