<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19295

Description Uncharacterized protein
SequenceMAAMEGAIQNQIQQPQPQQQQQPQPVIVERLNDAVQQQLNLESVKTRALSLFKAISRILEDFDVYARTNTTPKLQDILQQYSMVNLELFNIVDEIRKVSKAFVVHPKNVNANNSTILPVMLSSKLLPEMETDDNLKKDQLLHGMQNLPVSSQIEKLKARIDMIGAACESAEKVLADTRKAYCFGTRQGPPIVPTLDKAQAAKIQEQENLLRAAVNYGEGLRLPGDQRQVTPTLPMHLVDVLTTGMYHKNTPTSSNNLAAQSPLLQAPGSQLLGRSAASPGTVTATNFEGTTTSPLPYANSPRSSTSMMNTPSPQQQSQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQKLMQLPQHQQQQILAQQQFRQSAMQGLGQVRLSCMPFLDATTYLSCWKSYFTTCTSGSFYYVSLFCTYSL
Length417
PositionHead
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.06
Grand average of hydropathy-0.587
Instability index69.45
Isoelectric point8.80
Molecular weight46781.49
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19295
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      15|      15|     314|     328|       1
---------------------------------------------------------------------------
  314-  328 (32.09/ 9.28)	QQQSQQQQQQQQQQQ
  331-  345 (33.06/ 9.76)	QQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.28|      13|     335|       9|      21|       3
---------------------------------------------------------------------------
    9-   21 (26.41/10.27)	QNQIQQPQPQQQQ
  347-  359 (25.86/ 9.90)	QKLMQLPQHQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.61|      30|      31|     250|     279|       4
---------------------------------------------------------------------------
  250-  279 (52.46/28.70)	TPTSSN.NLAAQSPLLQA..PGSQLLGRSAASP
  281-  313 (44.15/23.08)	TVTATNfEGTTTSPLPYAnsPRSSTSMMNTPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.42|      26|      36|     165|     195|       5
---------------------------------------------------------------------------
  165-  193 (43.29/42.24)	AACESAEKVLadtRKAYCFG........TRQGPPIVP
  201-  234 (38.14/21.55)	AKIQEQENLL...RAAVNYGeglrlpgdQRQVTPTLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19295 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRLPGDQRQVTPTLPMHLVDVLTTGMYHKNTPTSSNNLAAQSPLLQAPGSQLLGRSAASPGTVTATNFEGTTTSPLPYANSPRSSTSMMNTPSPQQQSQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQKLMQLPQ
220
354










Molecular Recognition Features






MoRF SequenceStartStop




NANANA