<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19287

Description "Mediator complex, subunit Med"
SequenceMNRGPPEHWLYTGIFKRIDLQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAIDPAERILGMYSPFLAYHPLRFSFVRDILAYFYGHLPGKFIVRILNILDIKKIPFSDSFPQHISSTNPVICPPLDYFATLLSGLVNNVIPPLHNNSKSGSLCEALSNLLRKNPATSQSGQTNASDNQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQVVVNIQATLIQSSHGLHGASNGVGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTSNMVSRSGYSCQQLSCLMIQACGLLLAQLPPDFHIQLYIEASRIIKETWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGTHIIIKHLRPVTSVAMLRIAFRIMGPLLPRLANAHALFSKTLSLLLNTMVDVFGKNSQPSSPVEASEITDLIDFLHHVVHYEGQGGPVQSSSKPRPEVLALFGRVLESLRPDVQHLLSHLKPETNCSIYAATHPKLAPNSSQNSLT
Length534
PositionTail
OrganismTrema orientale (Charcoal tree) (Celtis orientalis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Trema.
Aromaticity0.08
Grand average of hydropathy0.043
Instability index47.44
Isoelectric point7.03
Molecular weight58442.32
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19287
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.40|      64|     104|      92|     195|       1
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  106-  180 (89.91/99.62)	LN..ILDIKKIPFSDSfpQHISSTNPVIcppLDYFATL......LSGLVNNV....IPPlhnNSKSGSLCEALSNlLRKNPatSQSG
  205-  280 (91.49/68.19)	LEtaVIEILSLPVSAS..QIVSSLVQVV...VNIQATLiqsshgLHGASNGVgqgsVLP...TSPSGGSTDSLGA.SRSNP..SVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.01|      75|     341|       9|      84|       2
---------------------------------------------------------------------------
    9-   84 (132.78/106.03)	WLYTGIFKRIDLQKALGNHL...SWKDR.............YPTFFDDIAARLLPVIPLIVYRL..IENDA.IDPAERILGMYSPFLA.YHPLrFS
  333-  427 (105.23/78.24)	WLADGKRSLGELDSAVGYALldpTWAAQdntstaignvvalLHSFFSNLPQEWLEGTHIIIKHLrpVTSVAmLRIAFRIMGPLLPRLAnAHAL.FS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19287 with Med23 domain of Kingdom Viridiplantae
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