<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19283

Description Transcription elongation factor
SequenceMDYDDLRTILDSSGVDVWTLIDTAIAVASMDYGGDLKKRRDGIVERLYAATATSSALASATTTAGFRSFDADQSSHSPPRQYDQDAKASAGKERVSPATPRSVGGDEDEDNEDGRLDSYGGLFDDEQKRVLEIKEHLEDPDQSEDSLVGLLQTLADMDITFQALRETDIGRHVNRLRKHSSSEVRRLVKQLVRKWKDIVDEWVKFNQPGEHASAVVDGDSPPQKIPQNGHHQVPDFAYSPNTHNGSSGSDKNSEPERKPKAVPPRREAPPKPATPSVPQPHSAPQNRQREQKESNFDLEKLASARKRLQANYKEAENAKKQRTIQVMDIHEIPKPKSKTGFFPKNKGGSGGSMGRH
Length356
PositionUnknown
OrganismParasponia andersonii (Sponia andersonii)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Cannabaceae> Parasponia.
Aromaticity0.05
Grand average of hydropathy-1.011
Instability index53.95
Isoelectric point6.29
Molecular weight39482.10
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
translation elongation factor activity	GO:0003746	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19283
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.74|      29|      32|       1|      29|       1
---------------------------------------------------------------------------
    1-   29 (49.68/34.52)	MDY.DDLRTILDSSGVDVWTLIDTAIAVAS
   30-   59 (44.06/29.87)	MDYgGDLKKRRDGIVERLYAATATSSALAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.52|      31|      32|     217|     247|       2
---------------------------------------------------------------------------
   77-  104 (39.36/17.57)	...SPPRQYDQD..AKASAGKERVSPATPRSVG
  217-  247 (56.53/28.22)	DGDSPPQKIPQN..GHHQVPDFAYSPNTHNGSS
  250-  278 (34.63/14.64)	DKNSEPERKPKAvpPRREAPPKPATPSVP....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19283 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NQPGEHASAVVDGDSPPQKIPQNGHHQVPDFAYSPNTHNGSSGSDKNSEPERKPKAVPPRREAPPKPATPSVPQPHSAPQNRQREQKESNFDLEKLASARKRLQANYKEAENAKKQRTIQVMDIHEIPKPKSKTGFFPKNKGGSGGSMGRH
2) RSFDADQSSHSPPRQYDQDAKASAGKERVSPATPRSVGGDEDEDNEDGRLDSY
206
67
356
119










Molecular Recognition Features






MoRF SequenceStartStop




1) QRTIQVMDIHEIPKPKSKTGFFPKNKGGSGGSMG
321
354