<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19281
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MEGRIPLSEAFRESVKYWSSFVSKCLTKRLDASTFEDYVQLVQSKHRLPPEIIADFFIRPMKSNCVSPDPRIPPYVSVLTKLRYTDAVSILRALYRYSSLHALIPEQSQHEGDGANGEGATRQDAQQAPSLRWKSSSWLEEVMFYHVIKLLVEGSAFKDSRTALELIHISSKWMVLFTTASNSMTADMLGGSLQDPQVRHEMETAWGALVPLVLRLVDNAAFVKVVSQPSAKGARKVFSESLASFVQVIQQSPQLPQFQQFINKLELFRTEVLAPLDPVDKSKQAANAVMDDILDSTVGVDNLVIPEVPITNTRAGLYIYLGASLVGRPLIDDHALFSYLNNRYQGDVQQSAVDLILASFDLLANAVFRNEGPRDAQLLRSFLINKVPLILAQLCPPGFATPSAEFCITQALPHVDTSVFPTASLMFDESRNNNPYTESVREEFCSACALHGLIEREHVERILGESSMGYEPSQEKYSKEKLVQSCLSDPEKIQALIRDMDKMDGNVGAVCQALVELLRQLCHSKETMSLKLLCSQLAQKPQSLDILLLFEKLPTILEPICQLLDSWRYEEDQGEYQPVYEEFGAILLLVLAFAYRYSLTPADIGIISPDSNVAKIIGRAHISRELGELSEQENGHVGGWIQGLFDSDAGGLGDDLMSSCPPADFYLLIATLFQNIVIAYTQGFLTDDALRSGVEYLIDTFLLPSLIPAIRFLSDYLWVEQKEQKSIIKILQLILLPTSISGEATTMLASVKGIVAKPLEHSLRSYQRQDPKNQDIEPLLRVLKDSLPFSRRTGAAEHQELELWATSSSSGLSGAAKHLIQGLVQWCVHTDETAMPTSYTHRQVIATLKIVGASRLLRVILEEIRHQTLAGNGSVVYDVATALICAPNVSNELPPTSGLLDETGNMLPILQRPLTLREVLKMEAEDYRKLQKKDAELAEIVVRLHRRVEAQMVLPPPPMLQAADMQLDLAGDATNLEDSIVVAAGVPGDATMSMDGVGSLDMGLGGISSDLGLGGPGSNGGLDASAEADLFGSLDDTDMDVFDGWGGMDLGGP |
Length | 1053 |
Position | Tail |
Organism | Trichoderma gamsii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.036 |
Instability index | 44.99 |
Isoelectric point | 4.89 |
Molecular weight | 115890.26 |
Publications | PubMed=26893428
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP19281
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 86.90| 25| 32| 118| 144| 1
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118- 144 (42.33/39.87) EGATRQDAQQAPSLRWKSSSWLeeVMF
153- 177 (44.57/34.28) EGSAFKDSRTALELIHISSKWM..VLF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 94.21| 28| 37| 985| 1016| 2
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985- 1016 (51.70/39.01) GVPG..DATMSMDGVGSL...DM....GLGGissdLGLGGP
1017- 1053 (42.51/23.30) GSNGglDASAEADLFGSLddtDMdvfdGWGG....MDLGGP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 34.04| 9| 37| 405| 414| 3
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405- 414 (14.40/13.32) EFCITQALpH
443- 451 (19.64/11.63) EFCSACAL.H
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.39| 45| 49| 473| 519| 4
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473- 519 (65.78/43.19) SQEKYSKEKLVQSCLSDPEKIQALIRdMDKMDGNVGAVCQaLVELLR
524- 568 (75.61/41.62) SKETMSLKLLCSQLAQKPQSLDILLL.FEKLPTILEPICQ.LLDSWR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.06| 27| 51| 230| 256| 5
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230- 256 (45.73/34.10) SAKGARKVFSESLASFVQVIQQS.PQLP
282- 309 (39.32/28.18) SKQAANAVMDDILDSTVGVDNLViPEVP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.02| 28| 31| 651| 680| 6
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651- 678 (51.98/35.63) G.LGDD..............LMSSCPPADF...YLLIATLFQNIVI
683- 728 (32.04/13.50) GfLTDDalrsgveylidtflLPSLIPAIRFlsdYLWVEQKEQKSII
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.75| 15| 19| 790| 804| 7
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790- 804 (28.65/19.12) SRRTGAAEH..QELELW
810- 826 (24.10/14.91) SGLSGAAKHliQGLVQW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 38.63| 15| 31| 335| 358| 9
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335- 358 (19.99/33.21) ALF............SYLNNRyqgdvqqsaVDLILA
366- 392 (18.63/ 9.43) AVFrnegprdaqllrSFLINK.........VPLILA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 82.17| 29| 37| 910| 942| 10
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910- 942 (42.05/38.45) LQRPLTLREVLkmeaEDYRKLQKKDA..ELAE........IVV
944- 982 (40.12/26.10) LHRRVEAQMVL....PPPPMLQAADMqlDLAGdatnledsIVV
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