Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MSSEGGPPLSLRPFPVADQKPKNLAEFIARVNAQPGGFRSITEDKLREELRNSEDPDAADDEDEEPSEAAGEADVAEKDPGVARMEVLKNIDIAGNAALLTLDSMSLLLSKQNPTQAGLTLSQQLRDMVGIGTLGADKLNDSNVTPAKTKDKEAIAMGWTLLEINKTRDSAEEAASFLEKEINSESKYWEDIVGVKKAGWSISRVPQERHTLGVRFGFSEAAAEFKNNGLAPMRRGDDGSADLDFGRLGGVSEALVVTYEKDGKVIGRSTTRPSSDDESLEARVLEARNTIFSQELWHELTKESRSLAAYDVKPEGRKLACQIDETTKITLELLPLESCPSPAQDMPENGLAEKISMALHILLSYAHRHNELMRIRPIPPHISRSTRQQSYALLRPVLARTMYLKNVEESMQKTGLLVRTLQKAGIQSSFILRTTQTTASDPSSRGPNQLSASHTLVRNLLQTQDFTIELTILPDVSLTIRGRSFSFPVTATYYYILLPPSSPLPALCPPWSEGYPSAQALGDYLRTAIARVLTNHFVKMLPSPPPSISGDDNATATATLVESAHDTSIQRTDKKTFDIDFALEHAGDAEQLILYVNNAAQSEEETKTWKWSVNGPSETTSAEQVVKTLIAEQAPS |
Length | 636 |
Position | Head |
Organism | Trichoderma gamsii |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.428 |
Instability index | 56.56 |
Isoelectric point | 5.08 |
Molecular weight | 69710.58 |
Publications | PubMed=26893428 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP19275 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 240.96| 62| 103| 410| 471| 1 --------------------------------------------------------------------------- 410- 471 (98.65/59.81) SMQKTGLLVRTLQKAGIQSSFILRTTQTTASDPSSR.......GPNQLSASHTLVRNLLQTQDFTIELT 517- 572 (85.73/51.02) SAQALGDYLRTAIARVLTNHFV...KMLPSPPPSIS.......GDDNATATATLVES...AHDTSIQRT 575- 633 (56.58/31.21) ...KTFDIDFALEHAGDAEQLILYVNNAAQSEEETKtwkwsvnGPSETTSAEQVVKTLIAEQ....... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 46.72| 15| 16| 186| 201| 2 --------------------------------------------------------------------------- 186- 201 (24.61/20.78) SKYWED..IVGVkKAGWS 203- 219 (22.11/13.11) SRVPQErhTLGV.RFGFS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.55| 16| 16| 150| 165| 3 --------------------------------------------------------------------------- 150- 165 (27.42/20.67) KDKEAIAMGWTLLEIN 168- 183 (25.13/18.32) RDSAEEAASFLEKEIN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.37| 15| 16| 364| 378| 4 --------------------------------------------------------------------------- 364- 378 (27.39/17.63) SYAHRHNELMRIRPI 383- 397 (24.98/15.50) SRSTRQQSYALLRPV --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GFRSITEDKL 2) PLSLRPFPVADQKPKNLAEFIARVNA | 37 8 | 46 33 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab