<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19268

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDKLIDERFERLEKALSGLIDSVTKYHPSMNLAEELMAADAELAKGLEQVQTHQNNHLRILELRQASTSLDAQIRDTLTSLSNTRRDIVNTHTTKFPSSPNYPIVYEELLSYARRISKTTMPPAATINASFPPSGLQSPTVGESQSQAVTPAATTPAAGATPAAAATPATSTPLPTQSPAAINGVGGTHGVSLQQSSQHPHQGSSSGPSLLTSLPEPMAQYLNPLSGQVFFPWPQEDKIRSGSLASNQILVEKGIDPRGFDPVAEEERKRKEEADRKEREEREAREQEERDRIMREERERLRQERELQREKEQNEWRRASVIAGAADAPGGAAPKGPEKKQFQFTNLDDLDDDDDDD
Length357
PositionMiddle
OrganismBeauveria bassiana (White muscardine disease fungus) (Tritirachium shiotae)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Beauveria.
Aromaticity0.04
Grand average of hydropathy-0.837
Instability index54.97
Isoelectric point5.08
Molecular weight39365.04
Publications
PubMed=27470140

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP19268
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.30|      23|      27|     266|     292|       1
---------------------------------------------------------------------------
  266-  292 (34.32/24.84)	EERKRKeeadRKEREEREAREQEERDR
  296-  318 (41.98/21.72)	EERERL....RQERELQREKEQNEWRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.51|      23|      27|     117|     139|       2
---------------------------------------------------------------------------
   82-  103 (36.34/15.03)	SNTRRDIVNTHTTKFPSSP.NYP
  117-  139 (42.09/18.28)	SKTTMPPAATINASFPPSGLQSP
  162-  179 (25.08/ 8.66)	.....PAAAATPATSTPLPTQSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19268 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPPAATINASFPPSGLQSPTVGESQSQAVTPAATTPAAGATPAAAATPATSTPLPTQSPAAINGVGGTHGVSLQQSSQHPHQGSSSGPSLLTSLPEPMA
2) SGSLASNQILVEKGIDPRGFDPVAEEERKRKEEADRKEREEREAREQEERDRIMREERERLRQERELQREKEQNEWRRASVIAGAADAPGGAAPKGPEKKQFQFTNLDDLDDDDDDD
121
241
219
357










Molecular Recognition Features






MoRF SequenceStartStop




1) EWRRASVIAGAADAP
2) GAAPKGPEKKQFQFTNLDDLDDDDDDD
3) PIVYEELL
315
331
103
329
357
110