<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19253

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMENGDGSGRTDHDRLSSNVKDVVDQRAAPDHKGKGKASGSPSDPPRMNDLPDEITHITQGFIPLSAFLTRLAQVTHNSLQEKVAELSKMPIPASALNGGATNLTSSAPDDTSAENLRKKATLLHFAQDMHAKWVKALVITEWSRRANMVSKLIDLKFHMDQLRVHYDVCLDNMVNVKRDLTYARMPAPDLKTALQVLSTGSAPWIPDHQYIEPPPLTADEKLRWIKDLNTRLSLRLNLQDYDKIPHQFRNYEIGSGRVTFKVPDEFEVELTIADEDTDKQFWFIDFRYTFRPSALSLSEGLRNYLENYVNDALARNGLAGCYQFLHEMVLTAKITELKRQALRLSRTSWDGTLVVEPLNRALAIQYWSSRSTTTKSWVLIAINSGKKNGKVDEKSPSYLVAKWYRDNKEVKDVKLTLDVGTLSAESLLKEVIGRHIGYILQNIRDKLLEAPRFKQHEAAMNLRISNTNPGDCMLTTQVSHNATTTLLVEPTTGIFAVKPQSKFSIPYEHQLNSGKNSTDDGAACLENVRCAMMEDELHRRGNMVGWQTQKMPLSVEEVKSVTKMRDWTRTIWMRKQGWGESWYMAIFLGLGGDEWWLLEANGNEPGRTVKFQARLPLSKGHPDFSTAFWGNLAIFATGMIAQVVDMRELHRLRIKSRTNDSINLALPPQLQLPSIQVALSAMFPSIVHNGGSKSEYRQPWANDVVTIRFTGIESTDDSLMCLSEAVLRVRKPSKFAALKGTVDGNLLYNAKLGEFCLRVQHAVGEPVLALLKSRIKAIDRFVNFLEAMDKSKGSIVGELVTLKEIRFLYYQAGSIDSESKQQWRITLDLSKDDIAIKIERGNPHLRVVDLMQQLVNSDGGIGALMRWLPASLRALEAVSSIETRWEDMQLKRLGRVDFAMKTLSWLSLQYTMTVADPSPTKRVILLQVRTQTRRGEAWWHVWRSHDGVAPSESDDDDAYAAALRSVWNGRGPGWIGLSTGAAARCESGVVGMLLAVDDAVRSVVVDDSSTAVPTQSSTNPSFTQRTSQSLNSGKDVVVLE
Length1040
PositionTail
OrganismBeauveria bassiana (White muscardine disease fungus) (Tritirachium shiotae)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Cordycipitaceae> Beauveria.
Aromaticity0.07
Grand average of hydropathy-0.344
Instability index37.26
Isoelectric point8.57
Molecular weight116614.70
Publications
PubMed=27470140

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP19253
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     192.78|      65|     390|     495|     582|       1
---------------------------------------------------------------------------
  260-  349 (85.95/41.47)	FKVPdeFEVELTIADEDTDkqfwfidfrytfrpsalslsEG...LRNYLENYVNDALARNGLAGCYQfLHEMVLTakITELKR.QALR.LSRTSW
  503-  572 (106.83/108.30)	FSIP..YEHQLNSGKNSTD....................DGaacLENVRCAMMEDELHRRGNMVGWQ.TQKMPLS..VEEVKSvTKMRdWTRTIW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.00|      52|     344|     592|     674|       3
---------------------------------------------------------------------------
  183-  238 (88.78/39.56)	ARMP....APDLKTA....LQVLSTGSAPWIPDHQYIEPPPLtadeKLRWIKDLNTRLSLRLNL
  613-  672 (78.22/92.80)	ARLPlskgHPDFSTAfwgnLAIFATGMIAQVVDMRELHRLRI....KSRTNDSINLALPPQLQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.93|      18|     591|      78|      99|       9
---------------------------------------------------------------------------
   78-   99 (19.30/28.92)	SLQekVAeLSKMpIPASALNGG
  674-  691 (34.63/23.76)	SIQ..VA.LSAM.FPSIVHNGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19253 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MENGDGSGRTDHDRLSSNVKDVVDQRAAPDHKGKGKASGSPSDPPRMNDLPDEIT
1
55










Molecular Recognition Features






MoRF SequenceStartStop




1) LSSNVKDVVDQRAAP
15
29